Variant report

Variant	rs844650
Chromosome Location	chr1:173224628-173224629
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1099449	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16845640	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2022034	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2743808	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844647	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844652	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844653	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844656	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844658	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844661	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844662	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844664	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173218800-173227600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:173219000-173227000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:173219000-173227400	Weak transcription	HMEC	breast
4	chr1:173219000-173229400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:173221800-173228400	Enhancers	HSMMtube	muscle
6	chr1:173223000-173225800	Weak transcription	HSMM	muscle
7	chr1:173223400-173225000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:173223600-173225000	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:173223600-173225000	Enhancers	GM12878-XiMat	blood
10	chr1:173224000-173225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:173224200-173224800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:173224200-173224800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:173224200-173224800	Enhancers	NHLF	lung
14	chr1:173224200-173224800	Enhancers	Osteobl	bone
15	chr1:173224600-173224800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:173224600-173225000	Enhancers	Hela-S3	cervix
17	chr1:173224600-173225200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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