Variant report

Variant	rs844661
Chromosome Location	chr1:173238130-173238131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173236743..173238421-chr1:173299046..173301179,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1099449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743808	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs844652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844658	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173228200-173239400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:173235200-173240000	Enhancers	HSMM	muscle
3	chr1:173235800-173240600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:173236000-173239000	Enhancers	Hela-S3	cervix
5	chr1:173236000-173240000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:173236000-173240200	Enhancers	HMEC	breast
7	chr1:173236200-173238400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:173236200-173239600	Enhancers	NHDF-Ad	bronchial
9	chr1:173236200-173240000	Enhancers	Osteobl	bone
10	chr1:173236200-173240200	Enhancers	NH-A	brain
11	chr1:173236400-173238400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:173236600-173239800	Enhancers	K562	blood
13	chr1:173236600-173240000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:173236600-173240000	Enhancers	HSMMtube	muscle
15	chr1:173236800-173239600	Enhancers	NHLF	lung
16	chr1:173237000-173240200	Weak transcription	Dnd41	blood
17	chr1:173237200-173238600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:173237200-173239000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:173237200-173239600	Enhancers	A549	lung
20	chr1:173237400-173238400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:173237400-173238600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:173237600-173238600	Weak transcription	NHEK	skin
23	chr1:173237600-173239000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:173237800-173240000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr1:173238000-173239400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:173238000-173240000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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