The 2.0 version of rSNPBase

Variant report

Variant rs16848419
Chromosome Location chr1:228440962-228440963
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228430600-228447000 Weak transcription Stomach Smooth Muscle stomach
2 chr1:228433200-228442400 Strong transcription HUES64 Cell Line embryonic stem cell
3 chr1:228433400-228449400 Weak transcription Brain Anterior Caudate brain
4 chr1:228434400-228441600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:228434600-228444400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:228434600-228455400 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:228434800-228444000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:228434800-228444000 Weak transcription Ovary ovary
9 chr1:228434800-228444600 Strong transcription Dnd41 blood
10 chr1:228434800-228445800 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:228434800-228460000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:228434800-228462400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:228435000-228441000 Strong transcription Fetal Muscle Leg muscle
14 chr1:228435000-228441200 Strong transcription Breast Myoepithelial Primary Cells Breast
15 chr1:228435000-228441200 Weak transcription Fetal Brain Male brain
16 chr1:228435000-228442400 Weak transcription Primary T killer naive cells fromperipheralblood blood
17 chr1:228435000-228442800 Weak transcription Aorta Aorta
18 chr1:228435000-228444000 Weak transcription Esophagus oesophagus
19 chr1:228435000-228446000 Weak transcription A549 lung
20 chr1:228435200-228443200 Weak transcription Fetal Kidney kidney
21 chr1:228435200-228449400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:228435200-228449600 Strong transcription Primary T cells from cord blood blood
23 chr1:228435200-228462800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr1:228435400-228441800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr1:228435600-228462600 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:228435800-228446400 Weak transcription Fetal Heart heart
27 chr1:228435800-228450200 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:228436000-228441200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr1:228436800-228447000 Weak transcription Psoas Muscle Psoas
30 chr1:228437000-228443800 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr1:228437000-228455600 Weak transcription Hela-S3 cervix
32 chr1:228438000-228441600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:228438000-228443800 Weak transcription Gastric stomach
34 chr1:228438000-228444800 Weak transcription Pancreas Pancrea
35 chr1:228438200-228443800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr1:228438200-228443800 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:228438200-228444200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:228438400-228443400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr1:228438400-228447000 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr1:228438400-228455600 Weak transcription Placenta Amnion Placenta Amnion
41 chr1:228438600-228443400 Weak transcription Fetal Lung lung
42 chr1:228438800-228444000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:228439000-228444000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:228439200-228444000 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr1:228439200-228445200 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:228439200-228449400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr1:228439400-228441800 Weak transcription Primary B cells from cord blood blood
48 chr1:228439400-228444200 Weak transcription H9 Cell Line embryonic stem cell
49 chr1:228439600-228443800 Weak transcription H1 Cell Line embryonic stem cell
50 chr1:228439600-228444200 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015