Variant report

Variant	rs16853299
Chromosome Location	chr2:168096616-168096617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16822926	1.00[AMR][1000 genomes]
rs16853277	1.00[AMR][1000 genomes]
rs16853329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853380	1.00[AMR][1000 genomes]
rs16853465	1.00[AMR][1000 genomes]
rs16853502	1.00[AMR][1000 genomes]
rs16853534	1.00[AMR][1000 genomes]
rs16853544	1.00[AMR][1000 genomes]
rs16853546	1.00[AMR][1000 genomes]
rs16853549	1.00[AMR][1000 genomes]
rs16853552	1.00[AMR][1000 genomes]
rs16853554	1.00[AMR][1000 genomes]
rs16853560	1.00[AMR][1000 genomes]
rs16853563	1.00[AMR][1000 genomes]
rs16853568	1.00[AMR][1000 genomes]
rs35951823	1.00[AMR][1000 genomes]
rs73017772	1.00[AMR][1000 genomes]
rs7556808	1.00[AMR][1000 genomes]
rs7582667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
2	chr2:168085000-168098600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:168085200-168097000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:168095800-168112200	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:168096200-168096800	Strong transcription	Left Ventricle	heart
6	chr2:168096400-168098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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