Variant report

Variant	rs16853465
Chromosome Location	chr2:168201134-168201135
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16822926	1.00[AMR][1000 genomes]
rs16853277	1.00[AMR][1000 genomes]
rs16853299	1.00[AMR][1000 genomes]
rs16853329	1.00[AMR][1000 genomes]
rs16853380	1.00[AMR][1000 genomes]
rs16853484	0.82[AFR][1000 genomes]
rs16853502	1.00[AMR][1000 genomes]
rs16853534	1.00[AMR][1000 genomes]
rs16853544	1.00[AMR][1000 genomes]
rs16853546	1.00[AMR][1000 genomes]
rs16853549	1.00[AMR][1000 genomes]
rs16853552	1.00[AMR][1000 genomes]
rs16853554	1.00[AMR][1000 genomes]
rs16853560	1.00[AMR][1000 genomes]
rs16853563	1.00[AMR][1000 genomes]
rs16853568	1.00[AMR][1000 genomes]
rs35951823	1.00[AMR][1000 genomes]
rs73017772	1.00[AMR][1000 genomes]
rs7556808	1.00[AMR][1000 genomes]
rs7582667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168194000-168201600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:168194200-168211600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:168197800-168202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:168198000-168203000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:168199000-168201800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:168199200-168201200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr2:168199200-168201200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:168199200-168202400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:168199200-168202400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:168199200-168202800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:168199200-168209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:168200000-168202400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:168200400-168201800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:168200600-168201600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:168200600-168201800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:168200600-168203200	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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