Variant report

Variant	rs7556808
Chromosome Location	chr2:168062558-168062559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16822926	1.00[AMR][1000 genomes]
rs16853277	1.00[AMR][1000 genomes]
rs16853299	1.00[AMR][1000 genomes]
rs16853329	1.00[AMR][1000 genomes]
rs16853380	1.00[AMR][1000 genomes]
rs16853465	1.00[AMR][1000 genomes]
rs16853502	1.00[AMR][1000 genomes]
rs16853534	1.00[AMR][1000 genomes]
rs16853544	1.00[AMR][1000 genomes]
rs16853546	1.00[AMR][1000 genomes]
rs16853549	1.00[AMR][1000 genomes]
rs16853552	1.00[AMR][1000 genomes]
rs16853554	1.00[AMR][1000 genomes]
rs16853560	1.00[AMR][1000 genomes]
rs16853563	1.00[AMR][1000 genomes]
rs16853568	1.00[AMR][1000 genomes]
rs35951823	1.00[AMR][1000 genomes]
rs73017772	1.00[AMR][1000 genomes]
rs7582667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002883	chr2:168023423-168072247	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv583589	chr2:168024328-168073830	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv583590	chr2:168024328-168075621	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv997489	chr2:168025002-168072247	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1015022	chr2:168027758-168072247	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168049600-168078800	Weak transcription	Right Ventricle	heart
2	chr2:168053600-168065800	Weak transcription	HSMMtube	muscle
3	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
4	chr2:168058000-168067200	Weak transcription	Left Ventricle	heart
5	chr2:168061800-168065400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:168062200-168062600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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