Variant report

Variant	rs16853380
Chromosome Location	chr2:168127955-168127956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16822926	1.00[AMR][1000 genomes]
rs16853277	1.00[AMR][1000 genomes]
rs16853299	1.00[AMR][1000 genomes]
rs16853329	1.00[AMR][1000 genomes]
rs16853465	1.00[AMR][1000 genomes]
rs16853502	1.00[AMR][1000 genomes]
rs16853534	1.00[AMR][1000 genomes]
rs16853544	1.00[AMR][1000 genomes]
rs16853546	1.00[AMR][1000 genomes]
rs16853549	1.00[AMR][1000 genomes]
rs16853552	1.00[AMR][1000 genomes]
rs16853554	1.00[AMR][1000 genomes]
rs16853560	1.00[AMR][1000 genomes]
rs16853563	1.00[AMR][1000 genomes]
rs16853568	1.00[AMR][1000 genomes]
rs35951823	1.00[AMR][1000 genomes]
rs73017772	1.00[AMR][1000 genomes]
rs7556808	1.00[AMR][1000 genomes]
rs7582667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168126200-168128400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168126200-168129000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:168126600-168128200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:168126600-168128400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:168126600-168129000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:168127400-168129600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:168127800-168129400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:168127800-168130400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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