Variant report

Variant	rs73017772
Chromosome Location	chr2:168204332-168204333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16822926	1.00[AMR][1000 genomes]
rs16853277	1.00[AMR][1000 genomes]
rs16853299	1.00[AMR][1000 genomes]
rs16853329	1.00[AMR][1000 genomes]
rs16853380	1.00[AMR][1000 genomes]
rs16853465	1.00[AMR][1000 genomes]
rs16853502	1.00[AMR][1000 genomes]
rs16853534	1.00[AMR][1000 genomes]
rs16853544	1.00[AMR][1000 genomes]
rs16853546	1.00[AMR][1000 genomes]
rs16853549	1.00[AMR][1000 genomes]
rs16853552	1.00[AMR][1000 genomes]
rs16853554	1.00[AMR][1000 genomes]
rs16853560	1.00[AMR][1000 genomes]
rs16853563	1.00[AMR][1000 genomes]
rs16853568	1.00[AMR][1000 genomes]
rs35951823	1.00[AMR][1000 genomes]
rs7556808	1.00[AMR][1000 genomes]
rs7582667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168194200-168211600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:168199200-168209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:168203200-168204400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:168203600-168204600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:168203800-168205800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:168204200-168209800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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