Variant report

Variant	rs16860283
Chromosome Location	chr3:112679216-112679217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16860051	1.00[AMR][1000 genomes]
rs16860052	1.00[AMR][1000 genomes]
rs16860365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860384	1.00[AMR][1000 genomes]
rs16860386	1.00[AMR][1000 genomes]
rs3852009	1.00[AMR][1000 genomes]
rs6438126	1.00[AMR][1000 genomes]
rs6804725	0.89[AFR][1000 genomes]
rs7610084	1.00[AMR][1000 genomes]
rs7614454	1.00[AMR][1000 genomes]
rs7640752	1.00[AFR][1000 genomes]
rs7651839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112675800-112682600	Weak transcription	Spleen	Spleen
2	chr3:112675800-112682800	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112676200-112682000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:112677200-112680200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:112678200-112679400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:112678200-112679600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:112678200-112681200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:112678200-112681600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:112678200-112684000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:112678400-112679400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:112679000-112679400	Enhancers	Primary T cells from cord blood	blood
12	chr3:112679000-112679400	Enhancers	GM12878-XiMat	blood
13	chr3:112679000-112681000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:112679200-112680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:112679200-112682000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:112679200-112682600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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