Variant report

Variant	rs16860384
Chromosome Location	chr3:112789379-112789380
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16860283	1.00[AMR][1000 genomes]
rs16860365	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860700	1.00[AMR][1000 genomes]
rs16860716	1.00[AMR][1000 genomes]
rs3852009	1.00[AMR][1000 genomes]
rs6438126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610084	1.00[AMR][1000 genomes]
rs7614454	1.00[AMR][1000 genomes]
rs7640752	1.00[YRI][hapmap]
rs7651839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
2	chr3:112784600-112792600	Weak transcription	Left Ventricle	heart
3	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:112787000-112791400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:112788200-112789400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:112788400-112789400	Enhancers	NHDF-Ad	bronchial
7	chr3:112788400-112790200	Enhancers	Fetal Muscle Leg	muscle
8	chr3:112788400-112790200	Enhancers	Fetal Stomach	stomach
9	chr3:112788400-112790600	Enhancers	Fetal Lung	lung
10	chr3:112788600-112789400	Enhancers	Stomach Smooth Muscle	stomach
11	chr3:112788800-112789800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:112788800-112790000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:112788800-112790200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:112788800-112790200	Enhancers	NHLF	lung
15	chr3:112789000-112789400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:112789000-112789600	Enhancers	A549	lung
17	chr3:112789000-112790000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:112789200-112789800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:112789200-112790000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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