Variant report

Variant	rs7651839
Chromosome Location	chr3:112807794-112807795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16860283	1.00[AMR][1000 genomes]
rs16860365	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860700	1.00[AMR][1000 genomes]
rs16860716	1.00[AMR][1000 genomes]
rs16860732	1.00[AMR][1000 genomes]
rs16860748	1.00[AMR][1000 genomes]
rs16860752	1.00[AMR][1000 genomes]
rs3852009	1.00[AMR][1000 genomes]
rs4082653	1.00[AMR][1000 genomes]
rs6438126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610084	1.00[AMR][1000 genomes]
rs7614454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112804000-112808000	Weak transcription	Adipose Nuclei	Adipose
3	chr3:112804200-112808000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:112804600-112807800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:112806000-112808400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112806200-112811400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:112806200-112811600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:112806400-112807800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:112806400-112813000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:112806600-112813000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:112807000-112808800	Strong transcription	Primary T cells from cord blood	blood
12	chr3:112807000-112812800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:112807200-112807800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:112807200-112812800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:112807400-112807800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:112807400-112807800	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:112807400-112811600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:112807600-112812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:112807600-112813000	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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