Variant report

Variant	rs6438126
Chromosome Location	chr3:112782277-112782278
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C3orf17-1	chr3:112781954-112782290	XLOC_003219
2	lnc-C3orf17-1	chr3:112781954-112782290	ENSG00000241219

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16860283	1.00[AMR][1000 genomes]
rs16860365	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16860700	1.00[AMR][1000 genomes]
rs3852009	1.00[AMR][1000 genomes]
rs7610084	1.00[AMR][1000 genomes]
rs7614454	1.00[AMR][1000 genomes]
rs7640752	1.00[YRI][hapmap]
rs7651839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770200-112784400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112770600-112783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:112770600-112784200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr3:112770600-112784400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:112770800-112783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:112770800-112787400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:112771000-112783800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:112771000-112784200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
11	chr3:112771200-112788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:112771400-112782600	Weak transcription	Fetal Stomach	stomach
13	chr3:112771600-112782600	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:112771600-112783800	Weak transcription	Brain Anterior Caudate	brain
15	chr3:112774600-112782800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:112776600-112789000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:112776800-112782400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:112777400-112782400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:112777400-112783800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr3:112779200-112784400	Strong transcription	Primary T cells from cord blood	blood
21	chr3:112779400-112784400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:112779800-112783200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:112780000-112784000	Weak transcription	Right Ventricle	heart
24	chr3:112780000-112784200	Weak transcription	Gastric	stomach
25	chr3:112780600-112783600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:112780800-112782800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:112781000-112783600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:112781200-112783400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr3:112781400-112782400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:112781400-112783000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:112781400-112783200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr3:112781600-112782600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:112781600-112783400	Enhancers	Ovary	ovary
34	chr3:112781800-112782600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr3:112781800-112782600	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:112781800-112782800	Strong transcription	Left Ventricle	heart
37	chr3:112781800-112782800	Enhancers	HMEC	breast
38	chr3:112782000-112782800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:112782000-112782800	Strong transcription	Fetal Muscle Leg	muscle
40	chr3:112782000-112783000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:112782000-112783600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr3:112782200-112782600	Enhancers	Fetal Brain Male	brain
43	chr3:112782200-112782600	Enhancers	NHDF-Ad	bronchial
44	chr3:112782200-112783000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:112782200-112783000	Enhancers	Rectal Smooth Muscle	rectum
46	chr3:112782200-112783000	Enhancers	NHEK	skin
47	chr3:112782200-112783400	Enhancers	Fetal Lung	lung
48	chr3:112782200-112783600	Strong transcription	Primary hematopoietic stem cells	blood
49	chr3:112782200-112784000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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