Variant report

Variant	rs3852009
Chromosome Location	chr3:112703858-112703859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112701295..112706602-chr3:112706876..112710741,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163607	Chromatin interaction
ENSG00000272844	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16860051	1.00[AMR][1000 genomes]
rs16860052	1.00[AMR][1000 genomes]
rs16860283	1.00[AMR][1000 genomes]
rs16860365	1.00[AMR][1000 genomes]
rs16860384	1.00[AMR][1000 genomes]
rs16860386	1.00[AMR][1000 genomes]
rs6438126	1.00[AMR][1000 genomes]
rs7610084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112700800-112705000	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr3:112701000-112704600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:112701000-112707400	Enhancers	Primary T cells from cord blood	blood
4	chr3:112701200-112704000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr3:112701200-112704600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:112701400-112705000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:112701600-112704400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:112701800-112704000	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:112701800-112704400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:112702000-112704000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:112702000-112704000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:112702200-112709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:112702400-112709000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:112702400-112709200	Weak transcription	GM12878-XiMat	blood
15	chr3:112702600-112704000	Enhancers	Fetal Thymus	thymus
16	chr3:112702600-112704600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:112702800-112704000	Enhancers	Thymus	Thymus
18	chr3:112702800-112704200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:112703000-112704000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:112703000-112704000	Enhancers	Psoas Muscle	Psoas
21	chr3:112703200-112704000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr3:112703200-112704600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:112703400-112704000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:112703400-112704000	Enhancers	Fetal Heart	heart
25	chr3:112703400-112704000	Enhancers	Fetal Muscle Leg	muscle
26	chr3:112703400-112704000	Enhancers	Placenta	Placenta
27	chr3:112703400-112704000	Enhancers	Right Atrium	heart
28	chr3:112703400-112704000	Enhancers	Stomach Smooth Muscle	stomach
29	chr3:112703800-112704200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:112703800-112709000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:112703800-112709000	Weak transcription	A549	lung
32	chr3:112703800-112709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:112703800-112709400	Weak transcription	Primary B cells from cord blood	blood
34	chr3:112703800-112709400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:112703800-112709400	Weak transcription	Gastric	stomach
36	chr3:112703800-112709400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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