The 2.0 version of rSNPBase

Variant report

Variant rs16862987
Chromosome Location chr1:170025942-170025943
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:169984800-170027600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:169999800-170036600 Weak transcription Small Intestine intestine
4 chr1:170002800-170036400 Weak transcription NHDF-Ad bronchial
5 chr1:170003600-170027600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:170007000-170026200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr1:170007600-170031800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:170008200-170032200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:170008800-170031800 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:170012200-170027000 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:170014000-170032200 Weak transcription Left Ventricle heart
12 chr1:170014600-170031400 Weak transcription GM12878-XiMat blood
13 chr1:170016000-170031000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:170016000-170031400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:170018200-170026200 Weak transcription Esophagus oesophagus
16 chr1:170018200-170042400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:170018600-170035800 Weak transcription Liver Liver
18 chr1:170018800-170026000 Weak transcription Primary B cells from peripheral blood blood
19 chr1:170018800-170026400 Weak transcription Adipose Nuclei Adipose
20 chr1:170018800-170026800 Weak transcription Dnd41 blood
21 chr1:170018800-170027400 Weak transcription Fetal Brain Female brain
22 chr1:170018800-170032200 Weak transcription Ovary ovary
23 chr1:170018800-170034600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr1:170018800-170037000 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:170018800-170040600 Weak transcription Aorta Aorta
26 chr1:170019000-170026000 Weak transcription Fetal Muscle Trunk muscle
27 chr1:170019000-170027200 Weak transcription Brain Germinal Matrix brain
28 chr1:170019000-170027400 Weak transcription Spleen Spleen
29 chr1:170019000-170027600 Weak transcription Primary T helper cells PMA-I stimulated --
30 chr1:170019000-170027600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:170019000-170035600 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr1:170019000-170037000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
33 chr1:170019000-170041400 Weak transcription Colon Smooth Muscle Colon
34 chr1:170019000-170042600 Weak transcription Thymus Thymus
35 chr1:170019200-170036800 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:170019200-170042400 Weak transcription Fetal Lung lung
37 chr1:170020200-170031200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr1:170023600-170026200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:170024000-170036400 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:170024200-170027600 Weak transcription Brain Anterior Caudate brain
41 chr1:170024200-170032000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:170024400-170037800 Weak transcription Primary T cells from cord blood blood
43 chr1:170024600-170026200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:170024600-170032200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:170024600-170032200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:170024600-170036800 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr1:170024800-170032400 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015