The 2.0 version of rSNPBase

Variant report

Variant rs16862922
Chromosome Location chr1:169983778-169983779
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169904000-170010400 Weak transcription Aorta Aorta
2 chr1:169914800-169984000 Weak transcription Left Ventricle heart
3 chr1:169914800-169984800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:169914800-169988800 Weak transcription Fetal Intestine Small intestine
5 chr1:169922000-169984000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:169922400-169996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:169944800-169989600 Weak transcription Thymus Thymus
8 chr1:169951600-170011800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:169951800-169984800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:169952000-169984600 Weak transcription Primary hematopoietic stem cells blood
11 chr1:169952000-169985200 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:169952000-170018000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:169952400-169984600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:169952600-169984800 Weak transcription Fetal Intestine Large intestine
16 chr1:169955000-169984800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr1:169955600-169984800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:169956800-169997400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:169966600-169984600 Weak transcription Primary B cells from peripheral blood blood
20 chr1:169966800-169984600 Weak transcription Stomach Smooth Muscle stomach
21 chr1:169966800-169984800 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:169967600-170013000 Weak transcription Fetal Heart heart
23 chr1:169968600-169984600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr1:169968800-169999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:169968800-170010800 Weak transcription Colon Smooth Muscle Colon
26 chr1:169968800-170020200 Weak transcription Brain Angular Gyrus brain
27 chr1:169969000-169984600 Weak transcription Brain Anterior Caudate brain
28 chr1:169969000-169984800 Weak transcription Ovary ovary
29 chr1:169969000-169997400 Weak transcription Fetal Stomach stomach
30 chr1:169969000-170012600 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:169969200-169984400 Weak transcription Brain Hippocampus Middle brain
32 chr1:169969200-169988800 Weak transcription Fetal Muscle Leg muscle
33 chr1:169969600-170017800 Weak transcription Esophagus oesophagus
34 chr1:169971400-169996400 Weak transcription NHDF-Ad bronchial
35 chr1:169974200-169984600 Weak transcription Liver Liver
36 chr1:169975800-169984600 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr1:169976400-169984400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr1:169976400-169984400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr1:169976400-169984600 Weak transcription GM12878-XiMat blood
40 chr1:169976600-169989600 Weak transcription Brain Germinal Matrix brain
41 chr1:169979400-169995800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr1:169979400-170018000 Weak transcription Brain Cingulate Gyrus brain
43 chr1:169979600-169987800 Weak transcription HSMM muscle
44 chr1:169979800-170015200 Weak transcription HMEC breast
45 chr1:169980000-170006600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr1:169980200-169989400 Weak transcription Fetal Kidney kidney
47 chr1:169980400-169989200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
48 chr1:169980600-169997400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:169980800-169984800 Weak transcription Fetal Thymus thymus
50 chr1:169981400-169986200 Strong transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015