Variant report
| Variant | rs16863007 |
|---|---|
| Chromosome Location | chr1:170054905-170054906 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:170042562..170044134-chr1:170053938..170056849,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KIFAP3 | TF binding region |
| ENSG00000075945 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12117652 | 0.85[YRI][hapmap] |
| rs12122794 | 0.91[AFR][1000 genomes] |
| rs12126443 | 0.82[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12144057 | 0.82[YRI][hapmap] |
| rs12144085 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12145948 | 0.82[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs16862864 | 1.00[AMR][1000 genomes] |
| rs16862894 | 1.00[AMR][1000 genomes] |
| rs16862898 | 1.00[AMR][1000 genomes] |
| rs16862900 | 1.00[AMR][1000 genomes] |
| rs16862909 | 1.00[AMR][1000 genomes] |
| rs16862913 | 1.00[AMR][1000 genomes] |
| rs16862917 | 1.00[AMR][1000 genomes] |
| rs16862922 | 1.00[AMR][1000 genomes] |
| rs16862938 | 1.00[AMR][1000 genomes] |
| rs16862959 | 1.00[AMR][1000 genomes] |
| rs16862967 | 1.00[AMR][1000 genomes] |
| rs16862971 | 1.00[AMR][1000 genomes] |
| rs16862987 | 1.00[AMR][1000 genomes] |
| rs16862993 | 1.00[AMR][1000 genomes] |
| rs16862995 | 1.00[AMR][1000 genomes] |
| rs16863069 | 0.82[YRI][hapmap] |
| rs2050650 | 1.00[AMR][1000 genomes] |
| rs36022648 | 1.00[AMR][1000 genomes] |
| rs4431903 | 1.00[AMR][1000 genomes] |
| rs59446257 | 1.00[AMR][1000 genomes] |
| rs60825089 | 1.00[AMR][1000 genomes] |
| rs60843604 | 1.00[AMR][1000 genomes] |
| rs60933865 | 1.00[AMR][1000 genomes] |
| rs7549000 | 0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014033 | chr1:169968488-170453021 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535200 | chr1:169968488-170453021 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
