The 2.0 version of rSNPBase

Variant report

Variant rs60825089
Chromosome Location chr1:169986482-169986483
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169904000-170010400 Weak transcription Aorta Aorta
2 chr1:169914800-169988800 Weak transcription Fetal Intestine Small intestine
3 chr1:169922400-169996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr1:169944800-169989600 Weak transcription Thymus Thymus
5 chr1:169951600-170011800 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:169952000-170018000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr1:169956800-169997400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:169967600-170013000 Weak transcription Fetal Heart heart
10 chr1:169968800-169999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:169968800-170010800 Weak transcription Colon Smooth Muscle Colon
12 chr1:169968800-170020200 Weak transcription Brain Angular Gyrus brain
13 chr1:169969000-169997400 Weak transcription Fetal Stomach stomach
14 chr1:169969000-170012600 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:169969200-169988800 Weak transcription Fetal Muscle Leg muscle
16 chr1:169969600-170017800 Weak transcription Esophagus oesophagus
17 chr1:169971400-169996400 Weak transcription NHDF-Ad bronchial
18 chr1:169976600-169989600 Weak transcription Brain Germinal Matrix brain
19 chr1:169979400-169995800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:169979400-170018000 Weak transcription Brain Cingulate Gyrus brain
21 chr1:169979600-169987800 Weak transcription HSMM muscle
22 chr1:169979800-170015200 Weak transcription HMEC breast
23 chr1:169980000-170006600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr1:169980200-169989400 Weak transcription Fetal Kidney kidney
25 chr1:169980400-169989200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:169980600-169997400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:169981600-170013400 Weak transcription Lung lung
28 chr1:169982000-169987000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:169982400-170020600 Weak transcription Rectal Smooth Muscle rectum
30 chr1:169982800-169994000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:169983000-170017200 Weak transcription HSMMtube muscle
32 chr1:169983400-169995400 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr1:169983400-169996000 Weak transcription Primary monocytes fromperipheralblood blood
34 chr1:169983800-169989400 Weak transcription Right Ventricle heart
35 chr1:169983800-170017600 Weak transcription Spleen Spleen
36 chr1:169984600-169987000 Strong transcription Primary T helper cells fromperipheralblood blood
37 chr1:169984600-170020800 Weak transcription Gastric stomach
38 chr1:169984800-170027600 Weak transcription Primary T killer naive cells fromperipheralblood blood
39 chr1:169985000-169988000 Weak transcription Brain Substantia Nigra brain
40 chr1:169985000-169989000 Weak transcription Fetal Brain Female brain
41 chr1:169985000-169995400 Weak transcription GM12878-XiMat blood
42 chr1:169985000-169996600 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:169985000-170010800 Weak transcription Brain Hippocampus Middle brain
44 chr1:169985000-170012800 Weak transcription Brain Anterior Caudate brain
45 chr1:169985200-169997000 Weak transcription Primary B cells from cord blood blood
46 chr1:169985200-170020400 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr1:169985600-169988600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:169985800-169988600 Weak transcription Fetal Muscle Trunk muscle
49 chr1:169985800-169988600 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:169985800-169988800 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015