Variant report

Variant	rs12124907
Chromosome Location	chr1:169980811-169980812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169979813..169982502-chr1:169983250..169984893,2	K562	blood:
2	chr1:169978528..169981053-chr1:170500147..170503138,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231407	Chromatin interaction
ENSG00000120370	Chromatin interaction

Extended variants
information (count: 304 )
Associated
traits (count: 23 )

rSNPs within LD-proxies of this variant (count:301)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10494479	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800489	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10919253	0.82[EUR][1000 genomes]
rs12116524	0.82[EUR][1000 genomes]
rs12116601	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12117794	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12118080	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118431	0.82[EUR][1000 genomes]
rs12118739	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119368	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12119386	0.82[EUR][1000 genomes]
rs12119447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119635	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12119665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120114	0.82[EUR][1000 genomes]
rs12120229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120727	0.82[EUR][1000 genomes]
rs12121045	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12121371	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121443	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12121451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121614	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12121797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122419	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12122606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122767	0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12122885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123432	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12123483	0.82[EUR][1000 genomes]
rs12123686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123806	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12123835	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12123865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124032	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124561	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124750	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124775	0.82[EUR][1000 genomes]
rs12125595	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs12125679	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs12126591	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12127120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127174	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127211	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12127500	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12127911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128126	1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128308	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12128929	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12129052	0.83[EUR][1000 genomes]
rs12129164	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129951	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12130150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130263	0.83[EUR][1000 genomes]
rs12130417	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130472	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130561	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131192	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs12131206	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131357	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs12131444	0.82[EUR][1000 genomes]
rs12131603	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132384	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12132892	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133074	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12133108	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133369	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133849	0.80[EUR][1000 genomes]
rs12134837	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12135057	0.82[EUR][1000 genomes]
rs12135355	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135559	0.82[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12136425	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12136554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137279	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138083	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138861	0.82[EUR][1000 genomes]
rs12139141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139629	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140134	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140984	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12141317	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12141377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141680	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142093	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12142355	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12142459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142511	0.82[EUR][1000 genomes]
rs12142959	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143057	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12143161	0.82[EUR][1000 genomes]
rs12143204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143260	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143301	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12143739	0.80[EUR][1000 genomes]
rs12143781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144122	0.86[EUR][1000 genomes]
rs12144207	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12144599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144624	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12144683	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12145295	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145458	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12145562	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146043	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1321657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496	0.82[EUR][1000 genomes]
rs16828222	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs16862751	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs16862898	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16862900	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16862913	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16862919	1.00[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862922	0.93[AFR][1000 genomes]
rs16862938	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16862956	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862959	0.85[AFR][1000 genomes]
rs16862967	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16862968	1.00[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862971	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17345663	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529304	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17529791	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17543370	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17543611	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17544823	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17601414	0.82[EUR][1000 genomes]
rs17601582	0.82[EUR][1000 genomes]
rs17601631	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17602051	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17602072	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17602701	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17603666	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2057249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093050	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145046	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2183418	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272919	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2272920	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2272921	0.81[EUR][1000 genomes]
rs2421109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474697	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474701	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2474704	0.88[EUR][1000 genomes]
rs2474705	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474706	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2750018	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2750019	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806384	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806385	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806387	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806389	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806390	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806392	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs28652825	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3766141	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs3766143	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3766152	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41272481	0.82[EUR][1000 genomes]
rs4385776	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs476485	0.88[EUR][1000 genomes]
rs478116	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs483103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486431	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs490469	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs490776	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495092	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs495642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517649	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs518928	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs520990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522017	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs536080	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537976	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541711	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs544008	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs545284	0.88[EUR][1000 genomes]
rs545954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549537	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs553209	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs554060	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs557475	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558782	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs559969	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560414	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs562054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565397	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs565626	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs571806	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs575147	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs576225	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs578916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57952001	0.83[EUR][1000 genomes]
rs579553	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs582900	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs583604	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590181	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs591202	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs591559	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs593406	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs595984	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598763	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs601355	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs602556	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606047	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606409	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606695	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60825089	0.93[AFR][1000 genomes]
rs612548	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs615485	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs615915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618149	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs618692	0.83[CEU][hapmap]
rs629408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs629593	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs630179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642352	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427231	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs644834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646730	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647113	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs648502	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655133	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs655474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656334	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs656848	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs657254	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs659363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661516	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664598	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs664962	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs665774	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6681685	0.83[EUR][1000 genomes]
rs671921	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs672843	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs673280	0.83[EUR][1000 genomes]
rs673656	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673789	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs674896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676020	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs677630	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs685155	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs686519	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs686911	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs687195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7411424	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122419	0.86[EUR][1000 genomes]
rs7549000	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9426888	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645328	0.82[EUR][1000 genomes]
rs9645329	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010370	chr1:169917450-169980951	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:23)

SNP	Gene	Cis/trans	Tissue	Source
rs12124907	METTL18	cis	lung	GTEx
rs12124907	METTL18	cis	Artery Aorta	GTEx
rs12124907	MGC9084	cis	multi-tissue	Pritchard
rs12124907	METTL18	cis	Artery Tibial	GTEx
rs12124907	SFT2D2	cis	cerebellum	SCAN
rs12124907	KIFAP3	cis	parietal	SCAN
rs12124907	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs12124907	C1orf156	cis	lesional skin	skin_eQTL
rs12124907	METTL18	cis	Muscle Skeletal	GTEx
rs12124907	C1orf156	cis	cerebellum	SCAN
rs12124907	C1orf156	cis	uninvolved skin	skin_eQTL
rs12124907	METTL18	cis	Adipose Subcutaneous	GTEx
rs12124907	METTL18	cis	Nerve Tibial	GTEx
rs12124907	METTL18	cis	Heart Left Ventricle	GTEx
rs12124907	METTL18	cis	Esophagus Muscularis	GTEx
rs12124907	C1orf156	cis	multi-tissue	Pritchard
rs12124907	C1orf156	cis	lymphoblastoid	seeQTL
rs12124907	C1orf112	cis	multi-tissue	Pritchard
rs12124907	POGK	cis	cerebellum	SCAN
rs12124907	C1orf156	cis	parietal	SCAN
rs12124907	C1orf112	cis	cerebellum	SCAN
rs12124907	METTL18	cis	Thyroid	GTEx
rs12124907	METTL18	cis	Esophagus Mucosa	GTEx

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169904000-170010400	Weak transcription	Aorta	Aorta
2	chr1:169914800-169984000	Weak transcription	Left Ventricle	heart
3	chr1:169914800-169984800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr1:169914800-169988800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:169922000-169984000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr1:169922400-169996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:169944800-169989600	Weak transcription	Thymus	Thymus
8	chr1:169951600-170011800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:169951800-169984800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:169952000-169983200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:169952000-169984600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:169952000-169985200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:169952000-170018000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:169952200-169983000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:169952400-169983000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:169952400-169984600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:169952400-170043000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:169952600-169984800	Weak transcription	Fetal Intestine Large	intestine
19	chr1:169955000-169984800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:169955600-169984800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:169956800-169997400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:169966600-169984600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:169966800-169984600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:169966800-169984800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr1:169967600-170013000	Weak transcription	Fetal Heart	heart
26	chr1:169968600-169982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:169968600-169984600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:169968800-169999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:169968800-170010800	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:169968800-170020200	Weak transcription	Brain Angular Gyrus	brain
31	chr1:169969000-169984600	Weak transcription	Brain Anterior Caudate	brain
32	chr1:169969000-169984800	Weak transcription	Ovary	ovary
33	chr1:169969000-169997400	Weak transcription	Fetal Stomach	stomach
34	chr1:169969000-170012600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:169969200-169982000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:169969200-169984400	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:169969200-169988800	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:169969400-169982800	Weak transcription	Adipose Nuclei	Adipose
39	chr1:169969600-170017800	Weak transcription	Esophagus	oesophagus
40	chr1:169969800-169982200	Weak transcription	Primary T cells from cord blood	blood
41	chr1:169971400-169982800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:169971400-169996400	Weak transcription	NHDF-Ad	bronchial
43	chr1:169973400-169982800	Weak transcription	Primary B cells from cord blood	blood
44	chr1:169974200-169984600	Weak transcription	Liver	Liver
45	chr1:169975800-169984600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr1:169976000-169982800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:169976400-169981400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:169976400-169984400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:169976400-169984400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:169976400-169984600	Weak transcription	GM12878-XiMat	blood

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