The 2.0 version of rSNPBase

Variant report

Variant rs558782
Chromosome Location chr1:169928110-169928111
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169878400-169946200 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr1:169904000-169929800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr1:169904000-169934800 Weak transcription Fetal Heart heart
4 chr1:169904000-169949800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:169904000-170010400 Weak transcription Aorta Aorta
6 chr1:169909200-169946000 Weak transcription Primary T cells from cord blood blood
7 chr1:169910400-169946200 Weak transcription Primary B cells from cord blood blood
8 chr1:169911200-169948800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr1:169911400-169946200 Weak transcription Dnd41 blood
10 chr1:169911400-169948600 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr1:169911600-169945800 Weak transcription Fetal Muscle Leg muscle
12 chr1:169911800-169946400 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:169911800-169949600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr1:169911800-169951200 Weak transcription Brain Hippocampus Middle brain
15 chr1:169911800-169968400 Weak transcription Psoas Muscle Psoas
16 chr1:169912000-169946200 Weak transcription Brain Cingulate Gyrus brain
17 chr1:169912000-169953600 Weak transcription Rectal Smooth Muscle rectum
18 chr1:169912000-169966000 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr1:169912000-169968600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:169912400-169950400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:169912800-169967200 Weak transcription NHDF-Ad bronchial
22 chr1:169913400-169953600 Weak transcription Primary B cells from peripheral blood blood
23 chr1:169913800-169938800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:169913800-169968400 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:169914000-169945800 Weak transcription Adipose Nuclei Adipose
26 chr1:169914000-169946200 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:169914000-169968400 Weak transcription Ovary ovary
28 chr1:169914200-169945800 Weak transcription Fetal Muscle Trunk muscle
29 chr1:169914600-169933400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr1:169914600-169961800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr1:169914600-169968000 Weak transcription Fetal Stomach stomach
32 chr1:169914800-169946000 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr1:169914800-169984000 Weak transcription Left Ventricle heart
34 chr1:169914800-169984800 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr1:169914800-169988800 Weak transcription Fetal Intestine Small intestine
36 chr1:169915200-169950800 Weak transcription Fetal Lung lung
37 chr1:169917200-169950800 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr1:169919000-169944800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:169919800-169946400 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:169920000-169928800 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr1:169921600-169968400 Weak transcription Fetal Brain Male brain
42 chr1:169922000-169984000 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr1:169922200-169968400 Weak transcription Brain Angular Gyrus brain
44 chr1:169922400-169996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:169923000-169946600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr1:169923200-169938800 Weak transcription Primary hematopoietic stem cells blood
47 chr1:169923600-169932000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:169923600-169933200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:169923600-169938600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:169923600-169939000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015