The 2.0 version of rSNPBase

Variant report

Variant rs12144599
Chromosome Location chr1:169981485-169981486
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169904000-170010400 Weak transcription Aorta Aorta
2 chr1:169914800-169984000 Weak transcription Left Ventricle heart
3 chr1:169914800-169984800 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:169914800-169988800 Weak transcription Fetal Intestine Small intestine
5 chr1:169922000-169984000 Weak transcription Primary T killer naive cells fromperipheralblood blood
6 chr1:169922400-169996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:169944800-169989600 Weak transcription Thymus Thymus
8 chr1:169951600-170011800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:169951800-169984800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:169952000-169983200 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:169952000-169984600 Weak transcription Primary hematopoietic stem cells blood
12 chr1:169952000-169985200 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr1:169952000-170018000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:169952200-169983000 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:169952400-169983000 Weak transcription Fetal Muscle Trunk muscle
16 chr1:169952400-169984600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:169952600-169984800 Weak transcription Fetal Intestine Large intestine
19 chr1:169955000-169984800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:169955600-169984800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr1:169956800-169997400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:169966600-169984600 Weak transcription Primary B cells from peripheral blood blood
23 chr1:169966800-169984600 Weak transcription Stomach Smooth Muscle stomach
24 chr1:169966800-169984800 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:169967600-170013000 Weak transcription Fetal Heart heart
26 chr1:169968600-169982200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:169968600-169984600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:169968800-169999400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:169968800-170010800 Weak transcription Colon Smooth Muscle Colon
30 chr1:169968800-170020200 Weak transcription Brain Angular Gyrus brain
31 chr1:169969000-169984600 Weak transcription Brain Anterior Caudate brain
32 chr1:169969000-169984800 Weak transcription Ovary ovary
33 chr1:169969000-169997400 Weak transcription Fetal Stomach stomach
34 chr1:169969000-170012600 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:169969200-169982000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:169969200-169984400 Weak transcription Brain Hippocampus Middle brain
37 chr1:169969200-169988800 Weak transcription Fetal Muscle Leg muscle
38 chr1:169969400-169982800 Weak transcription Adipose Nuclei Adipose
39 chr1:169969600-170017800 Weak transcription Esophagus oesophagus
40 chr1:169969800-169982200 Weak transcription Primary T cells from cord blood blood
41 chr1:169971400-169982800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:169971400-169996400 Weak transcription NHDF-Ad bronchial
43 chr1:169973400-169982800 Weak transcription Primary B cells from cord blood blood
44 chr1:169974200-169984600 Weak transcription Liver Liver
45 chr1:169975800-169984600 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:169976000-169982800 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr1:169976400-169984400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:169976400-169984400 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr1:169976400-169984600 Weak transcription GM12878-XiMat blood
50 chr1:169976600-169989600 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015