The 2.0 version of rSNPBase

Variant report

Variant rs562054
Chromosome Location chr1:169949429-169949430
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169904000-169949800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr1:169904000-170010400 Weak transcription Aorta Aorta
3 chr1:169911800-169949600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr1:169911800-169951200 Weak transcription Brain Hippocampus Middle brain
5 chr1:169911800-169968400 Weak transcription Psoas Muscle Psoas
6 chr1:169912000-169953600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:169912000-169966000 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:169912000-169968600 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr1:169912400-169950400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:169912800-169967200 Weak transcription NHDF-Ad bronchial
11 chr1:169913400-169953600 Weak transcription Primary B cells from peripheral blood blood
12 chr1:169913800-169968400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:169914000-169968400 Weak transcription Ovary ovary
14 chr1:169914600-169961800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:169914600-169968000 Weak transcription Fetal Stomach stomach
16 chr1:169914800-169984000 Weak transcription Left Ventricle heart
17 chr1:169914800-169984800 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr1:169914800-169988800 Weak transcription Fetal Intestine Small intestine
19 chr1:169915200-169950800 Weak transcription Fetal Lung lung
20 chr1:169917200-169950800 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:169921600-169968400 Weak transcription Fetal Brain Male brain
22 chr1:169922000-169984000 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:169922200-169968400 Weak transcription Brain Angular Gyrus brain
24 chr1:169922400-169996400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:169923600-169950400 Weak transcription Liver Liver
26 chr1:169923800-169950800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr1:169927600-169951600 Weak transcription Fetal Intestine Large intestine
28 chr1:169930400-169968400 Weak transcription Small Intestine intestine
29 chr1:169930800-169954200 Weak transcription Colon Smooth Muscle Colon
30 chr1:169934800-169952800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:169935400-169954200 Weak transcription Fetal Heart heart
32 chr1:169935600-169968400 Weak transcription Fetal Kidney kidney
33 chr1:169935800-169949600 Weak transcription Stomach Smooth Muscle stomach
34 chr1:169937600-169956600 Weak transcription Pancreas Pancrea
35 chr1:169938000-169968400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr1:169938200-169952200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:169938200-169965400 Weak transcription Duodenum Mucosa Duodenum
38 chr1:169938600-169953400 Weak transcription Right Ventricle heart
39 chr1:169938800-169962200 Weak transcription Esophagus oesophagus
40 chr1:169939000-169968400 Weak transcription Brain Inferior Temporal Lobe brain
41 chr1:169939200-169967400 Weak transcription Osteobl bone
42 chr1:169939600-169950400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:169942000-169953400 Weak transcription Placenta Amnion Placenta Amnion
44 chr1:169944400-169952000 Weak transcription Fetal Thymus thymus
45 chr1:169944800-169954600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:169944800-169968000 Weak transcription Brain Substantia Nigra brain
47 chr1:169944800-169989600 Weak transcription Thymus Thymus
48 chr1:169945000-169951200 Weak transcription Placenta Placenta
49 chr1:169945000-169953800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:169945200-169952400 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015