The 2.0 version of rSNPBase

Variant report

Variant rs12140984
Chromosome Location chr1:169887347-169887348
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169872800-169887800 Weak transcription Primary T cells from cord blood blood
2 chr1:169875800-169889800 Weak transcription Fetal Brain Female brain
3 chr1:169876200-169903600 Weak transcription Aorta Aorta
4 chr1:169877600-169889800 Weak transcription Lung lung
5 chr1:169878400-169892200 Weak transcription Duodenum Mucosa Duodenum
6 chr1:169878400-169895200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr1:169878400-169946200 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr1:169878600-169895000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:169880200-169892800 Weak transcription Fetal Heart heart
10 chr1:169881000-169888000 Weak transcription Fetal Brain Male brain
11 chr1:169881400-169901000 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr1:169882200-169892000 Weak transcription Brain Germinal Matrix brain
13 chr1:169883000-169890600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:169884200-169913000 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:169884400-169888200 Weak transcription Adipose Nuclei Adipose
16 chr1:169884400-169889000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:169884400-169891000 Weak transcription Esophagus oesophagus
18 chr1:169884600-169887600 Weak transcription Fetal Muscle Trunk muscle
19 chr1:169884600-169887800 Weak transcription Small Intestine intestine
20 chr1:169884600-169888400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:169884600-169888600 Weak transcription NH-A brain
22 chr1:169884600-169892800 Weak transcription Pancreas Pancrea
23 chr1:169884600-169895200 Weak transcription Fetal Intestine Small intestine
24 chr1:169884600-169900600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:169884600-169900600 Weak transcription NHDF-Ad bronchial
26 chr1:169885200-169888200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:169885200-169888200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:169885200-169900800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:169885400-169894000 Weak transcription Right Ventricle heart
30 chr1:169885400-169913200 Weak transcription Ovary ovary
31 chr1:169885600-169892200 Weak transcription Brain Substantia Nigra brain
32 chr1:169885600-169903200 Weak transcription Placenta Amnion Placenta Amnion
33 chr1:169885800-169896600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr1:169885800-169898000 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr1:169886000-169894000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:169886200-169888200 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr1:169886400-169894600 Weak transcription Primary B cells from cord blood blood
38 chr1:169886400-169895200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:169886400-169913000 Weak transcription Primary T cells fromperipheralblood blood
40 chr1:169886600-169889400 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr1:169886600-169915600 Weak transcription Stomach Smooth Muscle stomach
42 chr1:169886800-169887400 Flanking Active TSS GM12878-XiMat blood
43 chr1:169886800-169888800 Enhancers Primary Natural Killer cells fromperipheralblood blood
44 chr1:169886800-169888800 Strong transcription Fetal Stomach stomach
45 chr1:169886800-169889400 Weak transcription Placenta Placenta
46 chr1:169886800-169891000 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr1:169887000-169888400 Enhancers Primary T helper 17 cells PMA-I stimulated --
48 chr1:169887000-169888800 Weak transcription Fetal Lung lung
49 chr1:169887000-169911400 Weak transcription Left Ventricle heart
50 chr1:169887200-169888000 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015