Variant report

Variant	rs12119635
Chromosome Location	chr1:169805549-169805550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 331 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:322)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489176	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10800489	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12116601	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12117794	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12118305	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12118431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12118739	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12119368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119447	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12119473	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12119665	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12120114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120229	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12120647	0.84[EUR][1000 genomes]
rs12120727	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12121313	0.84[EUR][1000 genomes]
rs12121443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121451	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12121606	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12121614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121681	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12121797	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12122419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122582	0.84[EUR][1000 genomes]
rs12122720	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12122767	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122776	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12122781	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12122885	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12123432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123686	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12123806	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123835	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123865	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12123942	0.84[EUR][1000 genomes]
rs12124032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12124561	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124750	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124907	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12125023	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12125595	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12125679	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12126591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127120	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12127211	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12127500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12127911	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12128126	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12128308	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128695	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12128704	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12128929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129052	0.89[EUR][1000 genomes]
rs12129443	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12129951	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12130263	0.89[EUR][1000 genomes]
rs12130372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12130784	0.84[EUR][1000 genomes]
rs12131192	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12131357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132173	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12132222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12132384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132633	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs12132692	0.82[EUR][1000 genomes]
rs12133074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133108	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133115	0.82[EUR][1000 genomes]
rs12133369	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133849	0.86[EUR][1000 genomes]
rs12134837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12135057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12137905	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12138861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140134	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12140656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140984	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12141317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142355	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12142511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143161	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143260	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12143301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143739	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143781	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12144122	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12144207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12144599	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12144624	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145295	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12145417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145504	0.84[EUR][1000 genomes]
rs12145574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145705	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12146043	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1321657	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1569457	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16828207	0.83[AFR][1000 genomes]
rs16828222	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16862751	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs16862919	1.00[CEU][hapmap]
rs16862956	1.00[CEU][hapmap]
rs16862968	1.00[CEU][hapmap]
rs17349733	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17349740	0.82[EUR][1000 genomes]
rs17527744	0.84[EUR][1000 genomes]
rs17529304	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17529791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17543370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17544823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17593568	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs17593862	0.91[EUR][1000 genomes]
rs17601414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17601582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17601631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17603666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1800015	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1800016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1805193	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2057249	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2093050	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2145046	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2272919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272920	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272921	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474698	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2474704	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2474705	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2750018	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2750019	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806384	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806385	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806387	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806389	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806390	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806392	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28652825	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3766135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766152	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3917392	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917399	0.83[AFR][1000 genomes]
rs3917400	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917410	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917411	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917425	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917427	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917431	0.83[AFR][1000 genomes]
rs3917441	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917450	0.83[AFR][1000 genomes]
rs3917452	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41272481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41304562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4385776	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4519	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs476485	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs478116	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs483103	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs486431	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490469	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490776	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495092	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs495642	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4987289	0.83[AFR][1000 genomes]
rs4987294	0.83[AFR][1000 genomes]
rs4987295	0.83[AFR][1000 genomes]
rs4987299	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987302	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987304	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987307	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987308	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987323	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987324	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987325	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987340	0.83[CEU][hapmap]
rs4987343	0.83[CEU][hapmap]
rs4987345	0.83[CEU][hapmap]
rs4987363	0.83[CEU][hapmap]
rs4987365	0.83[AFR][1000 genomes]
rs4987383	0.83[AFR][1000 genomes]
rs4987395	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs505336	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs506196	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs510681	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs511443	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs511609	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs517649	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs518928	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs520990	0.82[EUR][1000 genomes]
rs521165	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs522017	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5357	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs536080	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5361	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5362	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5363	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs536358	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5367	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs536834	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs537976	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541711	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs544008	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs545954	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs545963	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs549537	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs553209	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs554060	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55686910	0.83[AFR][1000 genomes]
rs557475	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558540	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558782	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs559969	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs560414	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs562054	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs562837	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565397	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565626	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs571806	0.85[EUR][1000 genomes]
rs575147	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs576225	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs578916	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57952001	0.89[EUR][1000 genomes]
rs579553	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs582900	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs583604	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs590181	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591202	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591559	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs593406	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs595984	0.85[EUR][1000 genomes]
rs598763	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs601355	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs602556	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606047	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606409	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606689	1.00[CEU][hapmap]
rs606695	0.83[CEU][hapmap]
rs607707	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs612548	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs615485	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs615915	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs616789	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs618149	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs618692	0.83[CEU][hapmap]
rs629408	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs629421	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs629593	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs630179	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs638486	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs642352	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs644834	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs646730	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647113	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs648502	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs655133	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs655474	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs656334	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs656848	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs657254	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs659363	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs661516	0.81[AMR][1000 genomes]
rs664598	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs664962	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs665774	1.00[CEU][hapmap]
rs6681685	0.89[EUR][1000 genomes]
rs671921	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672843	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs673656	0.85[EUR][1000 genomes]
rs673789	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs674896	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs675394	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs676020	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs677630	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs680269	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs685155	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686519	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686911	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs687195	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74122419	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs909628	0.83[CEU][hapmap]
rs9426888	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9645328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1814601	chr1:169782006-169885186	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv1821503	chr1:169782006-169885186	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1847722	chr1:169782006-169885186	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2757760	chr1:169782006-169885186	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2758976	chr1:169782006-169885186	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv428268	chr1:169782006-169885186	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv872542	chr1:169802760-169844093	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs12119635	METTL18	cis	Esophagus Mucosa	GTEx
rs12119635	METTL18	cis	Artery Aorta	GTEx
rs12119635	METTL18	cis	Stomach	GTEx
rs12119635	METTL18	cis	Esophagus Muscularis	GTEx
rs12119635	METTL18	cis	Nerve Tibial	GTEx
rs12119635	METTL18	cis	lung	GTEx
rs12119635	METTL18	cis	Thyroid	GTEx
rs12119635	MGC9084	cis	multi-tissue	Pritchard
rs12119635	METTL18	cis	Adipose Subcutaneous	GTEx
rs12119635	METTL18	cis	Muscle Skeletal	GTEx
rs12119635	C1orf156	cis	lesional skin	skin_eQTL
rs12119635	METTL18	cis	Heart Left Ventricle	GTEx
rs12119635	METTL18	cis	Artery Tibial	GTEx
rs12119635	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs12119635	C1orf156	cis	uninvolved skin	skin_eQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169764800-169818200	Weak transcription	Esophagus	oesophagus
2	chr1:169764800-169818200	Weak transcription	Lung	lung
3	chr1:169764800-169823600	Weak transcription	Gastric	stomach
4	chr1:169765000-169808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:169765000-169821800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:169765200-169807800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:169765200-169808000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:169765200-169809000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:169765200-169814800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:169765200-169815200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:169765200-169818800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:169765200-169820600	Weak transcription	Psoas Muscle	Psoas
13	chr1:169765200-169823400	Weak transcription	Right Ventricle	heart
14	chr1:169765400-169808000	Weak transcription	Fetal Heart	heart
15	chr1:169765400-169822600	Weak transcription	Colonic Mucosa	Colon
16	chr1:169765600-169808000	Weak transcription	Small Intestine	intestine
17	chr1:169765600-169818200	Weak transcription	NHLF	lung
18	chr1:169765800-169808000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:169765800-169815200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr1:169765800-169818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:169773400-169808000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:169776400-169808000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr1:169777400-169815400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:169784000-169814000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:169784000-169814800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:169786200-169862400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr1:169786600-169841400	Strong transcription	Dnd41	blood
28	chr1:169788600-169823600	Weak transcription	Pancreas	Pancrea
29	chr1:169789200-169818600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:169790400-169808000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:169790800-169808000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:169790800-169808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr1:169791200-169808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:169791200-169810800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:169791200-169841200	Strong transcription	Fetal Thymus	thymus
36	chr1:169793800-169808000	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:169793800-169808000	Weak transcription	Fetal Brain Male	brain
38	chr1:169793800-169814400	Weak transcription	Brain Substantia Nigra	brain
39	chr1:169793800-169822600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr1:169794000-169814800	Weak transcription	Aorta	Aorta
41	chr1:169794200-169808000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr1:169794200-169818400	Weak transcription	NHEK	skin
43	chr1:169794800-169822000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:169796200-169808000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:169796400-169808000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:169797000-169818200	Weak transcription	Spleen	Spleen
47	chr1:169797600-169806600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr1:169797600-169807800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:169797600-169808000	Weak transcription	Fetal Kidney	kidney
50	chr1:169797600-169818200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

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