Variant report

Variant	rs3917450
Chromosome Location	chr1:169691179-169691180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169690602..169692363-chr1:169698364..169700562,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10489176	0.83[AFR][1000 genomes]
rs10919253	0.83[AFR][1000 genomes]
rs12118431	0.83[AFR][1000 genomes]
rs12118559	0.83[AFR][1000 genomes]
rs12119386	0.83[AFR][1000 genomes]
rs12119473	0.83[AFR][1000 genomes]
rs12119635	0.83[AFR][1000 genomes]
rs12120727	0.83[AFR][1000 genomes]
rs12121113	0.83[AFR][1000 genomes]
rs12122767	0.83[AFR][1000 genomes]
rs12126591	0.83[AFR][1000 genomes]
rs12128929	0.83[AFR][1000 genomes]
rs12132384	0.83[AFR][1000 genomes]
rs12133074	0.83[AFR][1000 genomes]
rs12135361	0.83[AFR][1000 genomes]
rs12135559	0.83[AFR][1000 genomes]
rs12135642	0.83[AFR][1000 genomes]
rs12136425	0.83[AFR][1000 genomes]
rs12138861	0.83[AFR][1000 genomes]
rs12140656	0.83[AFR][1000 genomes]
rs12141317	0.83[AFR][1000 genomes]
rs12141572	0.83[AFR][1000 genomes]
rs12142093	0.83[AFR][1000 genomes]
rs12143057	0.83[AFR][1000 genomes]
rs12143161	0.83[AFR][1000 genomes]
rs12144204	0.83[AFR][1000 genomes]
rs12145417	0.83[AFR][1000 genomes]
rs12145458	0.83[AFR][1000 genomes]
rs12145574	0.83[AFR][1000 genomes]
rs1496	0.83[AFR][1000 genomes]
rs16828207	1.00[AFR][1000 genomes]
rs17529791	0.83[AFR][1000 genomes]
rs17543370	0.83[AFR][1000 genomes]
rs17543611	0.83[AFR][1000 genomes]
rs17543730	0.83[AFR][1000 genomes]
rs17601414	0.83[AFR][1000 genomes]
rs17601582	0.83[AFR][1000 genomes]
rs17602051	0.83[AFR][1000 genomes]
rs17602701	0.83[AFR][1000 genomes]
rs2272920	0.83[AFR][1000 genomes]
rs3766135	0.83[AFR][1000 genomes]
rs3766141	0.83[AFR][1000 genomes]
rs3766143	0.83[AFR][1000 genomes]
rs3917399	1.00[AFR][1000 genomes]
rs3917431	1.00[AFR][1000 genomes]
rs41272481	0.83[AFR][1000 genomes]
rs4987289	1.00[AFR][1000 genomes]
rs4987294	1.00[AFR][1000 genomes]
rs4987295	1.00[AFR][1000 genomes]
rs4987365	1.00[AFR][1000 genomes]
rs4987383	1.00[AFR][1000 genomes]
rs55686910	1.00[AFR][1000 genomes]
rs9645328	0.83[AFR][1000 genomes]
rs9645329	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872541	chr1:169672360-169695815	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169681200-169692000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:169681400-169691200	Weak transcription	Liver	Liver
3	chr1:169690800-169691400	Enhancers	Dnd41	blood

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