Variant report

Variant	rs12135361
Chromosome Location	chr1:169761591-169761592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169732129..169734775-chr1:169760977..169762704,2	K562	blood:
2	chr1:169737043..169739732-chr1:169761259..169763805,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230704	Chromatin interaction
ENSG00000007908	Chromatin interaction

Extended variants
information (count: 287 )
Associated
traits (count: 24 )

rSNPs within LD-proxies of this variant (count:286)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489176	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800489	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12116524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12116601	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117794	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12118431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119473	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12119635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120647	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120727	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121313	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12121443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121606	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12121614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121681	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12122419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122582	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122767	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122776	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122781	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12123432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123806	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123835	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123942	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12124032	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12124561	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124750	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125023	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125595	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12125679	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12126591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127211	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12127500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12128308	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128695	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12128704	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12128929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129052	0.89[EUR][1000 genomes]
rs12129443	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12129951	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12130263	0.89[EUR][1000 genomes]
rs12130372	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12130784	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12131192	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12131357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132384	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132633	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12132692	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12133074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12133108	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133369	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133849	0.86[EUR][1000 genomes]
rs12134837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12135057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136425	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12137905	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12138861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140134	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12140656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140984	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12141317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142093	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142355	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12142511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143057	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143161	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143739	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12144122	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12144624	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145504	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146043	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1569457	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16828207	0.83[AFR][1000 genomes]
rs16828222	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs16862751	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs17527744	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17529304	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543370	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543611	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17544823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17593568	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17593862	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17601414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17601582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17601631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602701	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17603666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1800015	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1800016	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1805193	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2057249	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2093050	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2145046	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2272919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272921	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2474698	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2474704	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2474705	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2750018	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2750019	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806384	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806385	0.89[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806387	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806389	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806390	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806392	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28652825	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3766135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766152	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3917388	0.87[ASN][1000 genomes]
rs3917392	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917396	0.87[ASN][1000 genomes]
rs3917399	0.83[AFR][1000 genomes]
rs3917400	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3917410	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3917411	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917424	0.87[ASN][1000 genomes]
rs3917425	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917427	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917431	0.83[AFR][1000 genomes]
rs3917441	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917450	0.83[AFR][1000 genomes]
rs3917452	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917453	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs41272481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs476485	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs478116	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs486431	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490469	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490776	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495092	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4987289	0.83[AFR][1000 genomes]
rs4987294	0.83[AFR][1000 genomes]
rs4987295	0.83[AFR][1000 genomes]
rs4987299	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987302	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987304	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987307	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987308	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987317	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987323	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987324	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987325	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4987340	0.83[CEU][hapmap]
rs4987343	0.83[CEU][hapmap]
rs4987345	0.83[CEU][hapmap]
rs4987363	0.83[CEU][hapmap]
rs4987365	0.83[AFR][1000 genomes]
rs4987383	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[AFR][1000 genomes]
rs4987395	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs505336	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs506196	0.82[EUR][1000 genomes]
rs511443	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs517649	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs518928	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs520990	0.82[EUR][1000 genomes]
rs521165	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs522017	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5357	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs536080	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5361	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs5362	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs5363	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs536358	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5367	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs537976	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541711	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs544008	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs545954	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs545963	1.00[CEU][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs549537	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs553209	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs554060	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55686910	0.83[AFR][1000 genomes]
rs557475	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558540	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558782	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs559969	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs560414	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs562054	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56230202	0.87[ASN][1000 genomes]
rs562837	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565397	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565626	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs571806	0.85[EUR][1000 genomes]
rs57357201	0.87[ASN][1000 genomes]
rs575147	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs576225	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs578916	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57952001	0.89[EUR][1000 genomes]
rs579553	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs582900	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs583604	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs590181	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591202	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591559	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs593406	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs595984	0.85[EUR][1000 genomes]
rs598763	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs601355	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs602556	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606047	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606409	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs607707	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs612548	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs615485	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs615915	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs616789	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs618149	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs618692	0.83[CEU][hapmap]
rs629593	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs630179	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs638486	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs642352	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs644834	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs646730	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647113	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs648502	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs655133	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs655474	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs656334	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs656848	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs657254	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs659363	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs664598	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs664962	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs665774	1.00[CEU][hapmap]
rs6681685	0.89[EUR][1000 genomes]
rs671921	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672843	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs673656	0.85[EUR][1000 genomes]
rs673789	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs674896	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs675394	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs676020	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs677630	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs680269	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs685155	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686519	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686911	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74122419	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs909628	0.83[CEU][hapmap];1.00[MKK][hapmap]
rs9645328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:24)

SNP	Gene	Cis/trans	Tissue	Source
rs12135361	KIFAP3	cis	cerebellum	SCAN
rs12135361	C1orf156	cis	lymphoblastoid	seeQTL
rs12135361	METTL18	cis	Esophagus Muscularis	GTEx
rs12135361	C1orf156	cis	lesional skin	skin_eQTL
rs12135361	METTL18	cis	Artery Tibial	GTEx
rs12135361	MGC9084	cis	multi-tissue	Pritchard
rs12135361	METTL18	cis	Nerve Tibial	GTEx
rs12135361	METTL18	cis	Muscle Skeletal	GTEx
rs12135361	METTL18	cis	Heart Left Ventricle	GTEx
rs12135361	METTL18	cis	Esophagus Mucosa	GTEx
rs12135361	SFT2D2	cis	cerebellum	SCAN
rs12135361	ILDR2	cis	cerebellum	SCAN
rs12135361	METTL18	cis	lung	GTEx
rs12135361	KIFAP3	cis	parietal	SCAN
rs12135361	C1orf156	cis	parietal	SCAN
rs12135361	C1orf156	cis	uninvolved skin	skin_eQTL
rs12135361	C1orf156	cis	cerebellum	SCAN
rs12135361	TIPRL	cis	cerebellum	SCAN
rs12135361	METTL18	cis	Artery Aorta	GTEx
rs12135361	METTL18	cis	Adipose Subcutaneous	GTEx
rs12135361	METTL18	cis	Thyroid	GTEx
rs12135361	METTL18	cis	Stomach	GTEx
rs12135361	C1orf112	cis	cerebellum	SCAN
rs12135361	C1orf156	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169750800-169762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:169751600-169762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:169753600-169763000	Weak transcription	HMEC	breast
4	chr1:169756400-169762400	Weak transcription	Fetal Brain Male	brain
5	chr1:169756600-169762600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:169757000-169762400	Weak transcription	Fetal Thymus	thymus
7	chr1:169757400-169763000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:169757400-169763000	Weak transcription	Thymus	Thymus
9	chr1:169757400-169763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:169757600-169762200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:169757600-169763000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:169758000-169762800	Weak transcription	Primary B cells from cord blood	blood
13	chr1:169758200-169763200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:169758200-169763200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:169758400-169761600	Weak transcription	HepG2	liver
16	chr1:169758600-169763000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:169758600-169763200	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:169758600-169763200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:169758600-169763400	Weak transcription	Gastric	stomach
20	chr1:169758800-169762200	Weak transcription	Aorta	Aorta
21	chr1:169758800-169762400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:169758800-169763000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:169758800-169763000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:169758800-169763200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr1:169758800-169763200	Weak transcription	HSMM	muscle
26	chr1:169758800-169763600	Weak transcription	Spleen	Spleen
27	chr1:169759000-169762600	Weak transcription	Brain Germinal Matrix	brain
28	chr1:169759000-169762800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:169759000-169763000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr1:169759000-169763000	Weak transcription	A549	lung
31	chr1:169759200-169763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:169759200-169763200	Weak transcription	Ovary	ovary
33	chr1:169759200-169763200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:169759400-169762600	Weak transcription	Brain Anterior Caudate	brain
35	chr1:169759400-169763000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:169759600-169763000	Weak transcription	Brain Substantia Nigra	brain
37	chr1:169759600-169763200	Weak transcription	Pancreas	Pancrea
38	chr1:169759800-169763200	Weak transcription	Fetal Intestine Large	intestine
39	chr1:169759800-169763200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr1:169760000-169763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:169760200-169761600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr1:169760200-169763000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:169760400-169761600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:169760400-169761800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr1:169760400-169762000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:169760400-169762600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr1:169760400-169763000	Weak transcription	Fetal Stomach	stomach
48	chr1:169760400-169763200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr1:169760400-169763200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr1:169760400-169763200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

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