Variant report

Variant	rs12131357
Chromosome Location	chr1:169862064-169862065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:169861889-169863963	GM19099	blood:	n/a	n/a
2	RFX5	chr1:169861477-169864046	SK-N-SH	brain:	n/a	chr1:169863478-169863487
3	POLR2A	chr1:169861855-169862239	GM12891	blood:	n/a	n/a
4	MAFF	chr1:169861436-169862092	HepG2	liver:	n/a	chr1:169861777-169861795
5	HCFC1	chr1:169861435-169864287	Hela-S3	cervix:	n/a	n/a
6	MAFK	chr1:169861561-169862264	K562	blood:	n/a	chr1:169861780-169861791 chr1:169861778-169861792 chr1:169861780-169861791 chr1:169861779-169861790 chr1:169861573-169861593 chr1:169861779-169861794 chr1:169861779-169861790
7	POLR2A	chr1:169861160-169864335	GM12878	blood:	n/a	n/a
8	POLR2A	chr1:169861987-169864125	K562	blood:	n/a	n/a
9	MYC	chr1:169862027-169862295	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr1:169861878-169863661	IMR90	lung:	n/a	n/a
11	POLR2A	chr1:169861371-169863975	GM12878	blood:	n/a	n/a
12	SIN3AK20	chr1:169861960-169862699	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr1:169861661-169863983	GM19193	blood:	n/a	n/a
14	MTA3	chr1:169861771-169862469	GM12878	blood:	n/a	n/a
15	POLR2A	chr1:169861710-169864097	PFSK-1	brain:	n/a	n/a
16	MAZ	chr1:169861855-169863996	IMR90	lung:	n/a	n/a
17	POLR2A	chr1:169861710-169862172	SK-N-SH	brain:	n/a	n/a
18	MXI1	chr1:169861926-169863714	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr1:169861783-169864324	MCF10A-Er-Src	breast:	n/a	n/a
20	IRF1	chr1:169861748-169862368	K562	blood:	n/a	n/a
21	MAFK	chr1:169861531-169862095	IMR90	lung:	n/a	chr1:169861780-169861791 chr1:169861778-169861792 chr1:169861780-169861791 chr1:169861779-169861790 chr1:169861573-169861593 chr1:169861779-169861794 chr1:169861779-169861790
22	POLR2A	chr1:169861810-169863762	GM12892	blood:	n/a	n/a
23	POLR2A	chr1:169862034-169864384	Raji	blood:	n/a	n/a
24	JUND	chr1:169861502-169864054	SK-N-SH	brain:	n/a	chr1:169863455-169863464 chr1:169863477-169863486
25	POLR2A	chr1:169861948-169863760	HepG2	liver:	n/a	n/a
26	JUN	chr1:169861838-169865596	K562	blood:	n/a	chr1:169863455-169863464 chr1:169863451-169863464 chr1:169863477-169863486
27	RCOR1	chr1:169861858-169863969	K562	blood:	n/a	n/a
28	NRF1	chr1:169861818-169862081	H1-hESC	embryonic stem cell:	n/a	n/a
29	SMARCC1	chr1:169861907-169863914	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr1:169861947-169863806	GM12892	blood:	n/a	n/a
31	POLR2A	chr1:169861996-169863930	GM18505	blood:	n/a	n/a
32	MAFK	chr1:169861432-169862272	Hela-S3	cervix:	n/a	chr1:169861780-169861791 chr1:169861778-169861792 chr1:169861780-169861791 chr1:169861779-169861790 chr1:169861573-169861593 chr1:169861779-169861794 chr1:169861779-169861790
33	POLR2A	chr1:169861628-169864110	GM12878	blood:	n/a	n/a
34	POLR2A	chr1:169861983-169862182	GM12878	blood:	n/a	n/a
35	WRNIP1	chr1:169861982-169862302	GM12878	blood:	n/a	n/a
36	POLR2A	chr1:169861236-169864286	GM12891	blood:	n/a	n/a
37	MAFK	chr1:169861391-169862597	GM12878	blood:	n/a	chr1:169861780-169861791 chr1:169861778-169861792 chr1:169861780-169861791 chr1:169861779-169861790 chr1:169861573-169861593 chr1:169861779-169861794 chr1:169861779-169861790
38	MXI1	chr1:169861757-169863653	GM12878	blood:	n/a	n/a
39	STAT3	chr1:169861844-169862397	MCF10A-Er-Src	breast:	n/a	n/a
40	NR2F2	chr1:169861789-169864038	K562	blood:	n/a	n/a
41	POLR2A	chr1:169861923-169864229	HepG2	liver:	n/a	n/a
42	STAT5A	chr1:169861658-169862245	GM12878	blood:	n/a	n/a
43	MAFF	chr1:169861597-169862239	K562	blood:	n/a	chr1:169861777-169861795
44	POLR2A	chr1:169861795-169864148	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr1:169861936-169863893	GM12892	blood:	n/a	n/a
46	MTA3	chr1:169861548-169862421	GM12878	blood:	n/a	n/a
47	RCOR1	chr1:169861881-169863645	Hela-S3	cervix:	n/a	n/a
48	PML	chr1:169861780-169863989	GM12878	blood:	n/a	n/a
49	MYC	chr1:169861974-169862340	MCF10A-Er-Src	breast:	n/a	n/a
50	POLR2A	chr1:169861819-169864061	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:169861326..169864449-chr1:170043806..170046469,4	K562	blood:
2	chr1:169704931..169706505-chr1:169859799..169862220,2	K562	blood:
3	chr1:169763198..169765886-chr1:169860155..169862900,4	K562	blood:
4	chr1:169847953..169852057-chr1:169858381..169863040,5	MCF-7	breast:
5	chr1:169708422..169710485-chr1:169860930..169862840,2	MCF-7	breast:
6	chr1:169845717..169848182-chr1:169860925..169862962,2	MCF-7	breast:
7	chr1:169764521..169766056-chr1:169860447..169863119,2	MCF-7	breast:
8	chr1:169770689..169773107-chr1:169861267..169863060,2	K562	blood:
9	chr1:169770089..169773107-chr1:169860421..169863060,3	K562	blood:
10	chr1:169763198..169765715-chr1:169860443..169862900,3	K562	blood:

Variant related genes	Relation type
SCYL3	TF binding region
ENSG00000000460	Chromatin interaction
ENSG00000171806	Chromatin interaction
ENSG00000075945	Chromatin interaction

Extended variants
information (count: 362 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:354)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10489176	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10494479	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs10800489	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10919253	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116524	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116601	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116650	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12117794	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118305	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12118431	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12118559	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12118739	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12119299	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12119368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12119386	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12119447	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12119473	0.90[EUR][1000 genomes]
rs12119635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12119665	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12120114	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12120229	1.00[CEU][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs12120647	0.81[EUR][1000 genomes]
rs12120727	0.96[EUR][1000 genomes]
rs12121045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121113	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12121313	0.81[EUR][1000 genomes]
rs12121371	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs12121381	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12121443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121451	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12121606	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12121614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121681	1.00[CHB][hapmap]
rs12121797	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12122419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12122582	0.81[EUR][1000 genomes]
rs12122606	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12122720	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12122767	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12122776	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs12122781	1.00[CHB][hapmap]
rs12122885	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12123432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12123483	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12123686	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12123806	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12123835	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12123865	0.86[EUR][1000 genomes]
rs12123942	0.81[EUR][1000 genomes]
rs12124032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124384	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12124561	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12124750	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12124775	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12124907	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs12125023	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12125595	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12125679	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12126591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12127120	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12127174	0.84[EUR][1000 genomes]
rs12127211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12127500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127911	0.86[EUR][1000 genomes]
rs12128126	0.86[EUR][1000 genomes]
rs12128308	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12128695	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12128704	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12128929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12129052	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12129443	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12129951	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12130150	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12130263	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12130372	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs12130417	0.81[EUR][1000 genomes]
rs12130561	0.81[EUR][1000 genomes]
rs12130784	0.81[EUR][1000 genomes]
rs12131192	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12131444	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131603	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs12132173	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs12132222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12132384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12132633	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12132892	0.81[EUR][1000 genomes]
rs12133074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12133108	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12133115	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12133172	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12133369	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12133849	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12134837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12135057	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12135355	0.84[EUR][1000 genomes]
rs12135361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12135436	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12135559	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12136425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12136554	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12137279	0.81[EUR][1000 genomes]
rs12137423	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12137487	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12137873	0.81[EUR][1000 genomes]
rs12137905	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs12138083	0.81[EUR][1000 genomes]
rs12138861	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12139141	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12139629	0.81[EUR][1000 genomes]
rs12140134	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12140656	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12140984	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12141317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12141377	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12141428	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12141572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12141613	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs12141680	0.81[EUR][1000 genomes]
rs12142093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12142355	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12142459	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12142511	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12142959	0.81[EUR][1000 genomes]
rs12142961	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12143057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12143161	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12143204	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12143260	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12143301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12143739	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143781	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12144122	1.00[EUR][1000 genomes]
rs12144204	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144207	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144599	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12144624	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145295	0.86[EUR][1000 genomes]
rs12145417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145504	0.81[EUR][1000 genomes]
rs12145562	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12145574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145614	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs12145705	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12146043	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321657	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1496	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1569457	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs16828222	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16862751	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16862919	1.00[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs16862956	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16862968	1.00[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs17345663	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17349733	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17349740	0.86[EUR][1000 genomes]
rs17527744	0.81[EUR][1000 genomes]
rs17529304	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17529791	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17543370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17543611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593568	1.00[CHB][hapmap]
rs17593862	0.87[EUR][1000 genomes]
rs17601414	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17601582	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17601631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17602051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17602072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17602701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17603666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800015	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1800016	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1805193	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2057249	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs2093050	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2145046	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2183418	0.81[EUR][1000 genomes]
rs2272919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2272920	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2272921	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2421109	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2421110	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2474697	0.81[EUR][1000 genomes]
rs2474698	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2474704	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2474705	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2750018	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2750019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806384	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806385	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806387	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806389	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806390	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2806392	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28652825	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3766135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3766141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3766143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3766152	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917392	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs3917400	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs3917410	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3917411	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3917417	1.00[CHB][hapmap]
rs3917425	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3917427	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3917441	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs3917452	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs3917453	1.00[CHB][hapmap]
rs41272481	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41304562	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4385776	0.86[EUR][1000 genomes]
rs4519	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs476485	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs478116	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs483103	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs486431	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs490469	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs490776	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs495092	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs495642	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4987299	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4987302	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4987304	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4987307	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4987308	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4987317	1.00[CHB][hapmap]
rs4987323	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4987324	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4987325	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs4987340	0.80[CEU][hapmap]
rs4987343	0.80[CEU][hapmap]
rs4987345	0.80[CEU][hapmap]
rs4987363	0.80[CEU][hapmap]
rs4987395	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs505336	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs506196	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs510681	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs511443	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs511609	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs517649	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs518928	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs520990	0.86[EUR][1000 genomes]
rs521165	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs522017	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5357	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs536080	0.89[EUR][1000 genomes]
rs5361	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5362	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs5363	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs536358	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5367	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs536834	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs537976	0.89[EUR][1000 genomes]
rs541711	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs544008	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs545954	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs545963	1.00[CEU][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs549537	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs553209	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs554060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs557475	0.86[EUR][1000 genomes]
rs558540	0.86[EUR][1000 genomes]
rs558782	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs559969	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs560414	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs562054	0.86[EUR][1000 genomes]
rs562837	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs565397	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs565626	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs571806	0.89[EUR][1000 genomes]
rs575147	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs576225	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs578916	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57952001	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs579553	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs582900	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs583604	0.85[EUR][1000 genomes]
rs590181	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs591202	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs591559	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs593406	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs595984	0.89[EUR][1000 genomes]
rs598763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs601355	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs602556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs606047	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs606409	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs606689	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs606695	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs607707	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs612548	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61326145	0.95[AFR][1000 genomes]
rs615485	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs615915	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs616789	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs618149	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs618692	0.81[CEU][hapmap]
rs629408	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs629421	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs629593	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs630179	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs638486	1.00[CEU][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs642352	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6427231	1.00[CEU][hapmap]
rs644834	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs646730	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs647113	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs648502	0.92[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs655133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs655474	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs656334	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs656848	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs657254	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs659363	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs661516	0.84[EUR][1000 genomes]
rs664598	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs664962	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs665774	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6681685	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs671921	0.90[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs672843	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs673280	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs673656	0.89[EUR][1000 genomes]
rs673789	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs674896	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs675394	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs676020	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs677630	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs680269	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs685155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs686519	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs686911	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs687195	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7411424	0.81[EUR][1000 genomes]
rs74122418	0.98[AFR][1000 genomes]
rs74122419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549000	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9426888	0.86[EUR][1000 genomes]
rs9645328	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9645329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1814601	chr1:169782006-169885186	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv1821503	chr1:169782006-169885186	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1847722	chr1:169782006-169885186	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2757760	chr1:169782006-169885186	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2758976	chr1:169782006-169885186	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv428268	chr1:169782006-169885186	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs12131357	METTL18	cis	Artery Aorta	GTEx
rs12131357	METTL18	cis	Esophagus Mucosa	GTEx
rs12131357	C1orf156	cis	multi-tissue	Pritchard
rs12131357	METTL18	cis	Thyroid	GTEx
rs12131357	METTL18	cis	Heart Left Ventricle	GTEx
rs12131357	METTL18	cis	lung	GTEx
rs12131357	METTL18	cis	Nerve Tibial	GTEx
rs12131357	MGC9084	cis	multi-tissue	Pritchard
rs12131357	C1orf156	cis	lesional skin	skin_eQTL
rs12131357	METTL18	cis	Muscle Skeletal	GTEx
rs12131357	C1orf156	cis	lymphoblastoid	seeQTL
rs12131357	C1orf112	cis	multi-tissue	Pritchard
rs12131357	METTL18	cis	Adipose Subcutaneous	GTEx
rs12131357	C1orf156	cis	uninvolved skin	skin_eQTL
rs12131357	METTL18	cis	Esophagus Muscularis	GTEx
rs12131357	METTL18	cis	Artery Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169786200-169862400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:169852600-169862200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:169860000-169862200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:169860000-169862200	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr1:169860000-169862200	Enhancers	Spleen	Spleen
6	chr1:169860000-169862400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:169860400-169862200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:169861200-169862200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr1:169861200-169863800	Active TSS	Aorta	Aorta
10	chr1:169861200-169864000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr1:169861400-169862200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr1:169861400-169862200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:169861400-169862200	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr1:169861400-169862200	Flanking Active TSS	Fetal Lung	lung
15	chr1:169861400-169862200	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr1:169861400-169862200	Flanking Active TSS	HUVEC	blood vessel
17	chr1:169861400-169862200	Flanking Active TSS	K562	blood
18	chr1:169861400-169862200	Flanking Active TSS	Osteobl	bone
19	chr1:169861400-169862400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:169861400-169862400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:169861400-169862400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr1:169861400-169862400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr1:169861400-169862400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:169861400-169862400	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr1:169861400-169862400	Flanking Active TSS	Dnd41	blood
26	chr1:169861400-169863400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:169861400-169864000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:169861400-169864000	Active TSS	Colonic Mucosa	Colon
29	chr1:169861600-169862200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr1:169861600-169862200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr1:169861600-169862200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr1:169861600-169862200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr1:169861600-169862200	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr1:169861600-169862200	Flanking Active TSS	Brain Cingulate Gyrus	brain
35	chr1:169861600-169862200	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr1:169861600-169862200	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr1:169861600-169862200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr1:169861600-169862200	Flanking Active TSS	Fetal Stomach	stomach
39	chr1:169861600-169862200	Flanking Active TSS	Fetal Thymus	thymus
40	chr1:169861600-169862200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
41	chr1:169861600-169862200	Flanking Active TSS	Rectal Smooth Muscle	rectum
42	chr1:169861600-169862200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr1:169861600-169862200	Flanking Active TSS	Hela-S3	cervix
44	chr1:169861600-169862200	Flanking Active TSS	HMEC	breast
45	chr1:169861600-169862200	Flanking Active TSS	NH-A	brain
46	chr1:169861600-169862400	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr1:169861600-169862400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr1:169861600-169862400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr1:169861600-169862600	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr1:169861600-169863800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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