Variant report

Variant	rs17529304
Chromosome Location	chr1:169781291-169781292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169779646..169782995-chr1:169785005..169788657,4	K562	blood:
2	chr1:169769886..169772393-chr1:169780368..169783035,2	K562	blood:
3	chr1:169751559..169753241-chr1:169780241..169782649,2	MCF-7	breast:
4	chr1:169773501..169777762-chr1:169777936..169781823,4	K562	blood:
5	chr1:169769884..169771386-chr1:169780100..169781868,2	K562	blood:

Extended variants
information (count: 303 )
Associated
traits (count: 24 )

rSNPs within LD-proxies of this variant (count:302)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10489176	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800489	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10919253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12116524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12116601	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12116650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117794	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12118305	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12118431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119368	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12119473	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12119635	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120647	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12120727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121045	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121113	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121313	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12121443	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12121606	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12121614	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12121681	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12122419	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122582	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122767	0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12122776	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12122781	0.83[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12123432	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12123686	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12123806	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123835	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12123942	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12124032	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12124561	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124750	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12124775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12124907	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12125023	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12125595	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12125679	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12126591	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12127120	0.82[EUR][1000 genomes]
rs12127211	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12127500	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12127911	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12128308	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128695	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12128704	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12128929	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12129052	0.89[EUR][1000 genomes]
rs12129443	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12129951	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12130263	0.89[EUR][1000 genomes]
rs12130372	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12130784	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12131192	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs12131357	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12131444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132222	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132384	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132633	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12132692	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12133074	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12133108	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133369	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12133849	0.86[EUR][1000 genomes]
rs12134837	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12135057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135361	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136425	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12137905	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs12138861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140134	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12140656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140984	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12141317	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141572	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142093	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12142355	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12142511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143057	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143161	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143260	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12143301	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143739	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12143781	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12144122	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144207	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12144599	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12144624	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12144683	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145295	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12145417	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145458	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12145504	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12145574	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145705	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12146043	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1321657	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1569457	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs16828222	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs16862751	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs16862919	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs17527744	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17529791	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543370	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543611	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17544823	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17593568	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17593862	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17601414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17601582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17601631	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602072	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17602610	1.00[AFR][1000 genomes]
rs17602701	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17603666	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1800015	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1800016	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1805193	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2057249	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2093050	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2145046	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2272919	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272920	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2272921	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2474698	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2474704	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2474705	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2750018	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2750019	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806384	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806385	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806387	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806389	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806390	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2806392	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28652825	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3766135	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766141	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766143	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3766152	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3917388	0.87[ASN][1000 genomes]
rs3917392	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917396	0.87[ASN][1000 genomes]
rs3917400	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs3917410	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3917411	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917417	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917424	0.87[ASN][1000 genomes]
rs3917425	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917427	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917441	0.80[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917452	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3917453	1.00[JPT][hapmap]
rs41272481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs476485	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs478116	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs483103	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs486431	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490469	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs490776	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs495092	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs495642	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4987299	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987302	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4987304	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4987307	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4987308	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4987317	1.00[JPT][hapmap]
rs4987323	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987324	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4987325	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4987340	0.83[CEU][hapmap]
rs4987343	0.83[CEU][hapmap]
rs4987345	0.83[CEU][hapmap]
rs4987348	1.00[AFR][1000 genomes]
rs4987363	0.83[CEU][hapmap]
rs4987395	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs505336	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs506196	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs510681	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs511443	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs511609	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs517649	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs518928	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs520990	0.82[EUR][1000 genomes]
rs521165	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs522017	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5357	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs536080	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5361	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs5362	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs5363	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs536358	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5367	0.83[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs536834	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs537976	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs541711	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs544008	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs545954	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs545963	1.00[CEU][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs549537	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs553209	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs554060	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs557475	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558540	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558782	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs559969	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs560414	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs562054	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56230202	0.87[ASN][1000 genomes]
rs562837	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565397	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs565626	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs571806	0.85[EUR][1000 genomes]
rs57357201	0.87[ASN][1000 genomes]
rs575147	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs576225	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs578916	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57952001	0.89[EUR][1000 genomes]
rs579553	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs582900	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs583604	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs590181	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591202	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs591559	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs593406	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs595984	0.85[EUR][1000 genomes]
rs598763	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs601355	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs602556	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606047	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606409	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs606689	1.00[CEU][hapmap]
rs606695	0.83[CEU][hapmap]
rs607707	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs612548	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs615485	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs615915	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs616789	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs618149	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs618692	0.83[CEU][hapmap]
rs629408	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs629421	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs629593	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs630179	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs638486	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs642352	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs644834	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs646730	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647113	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs648502	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs655133	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs655474	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs656334	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs656848	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs657254	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs659363	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs661516	0.81[AMR][1000 genomes]
rs664598	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs664962	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs665774	1.00[CEU][hapmap]
rs6681685	0.89[EUR][1000 genomes]
rs671921	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs672843	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs673656	0.85[EUR][1000 genomes]
rs673789	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs674896	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs675394	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs676020	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs677630	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs680269	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs685155	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686519	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs686911	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs687195	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs74122419	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs909628	0.83[CEU][hapmap]
rs9426888	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9645328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:24)

SNP	Gene	Cis/trans	Tissue	Source
rs17529304	ILDR2	cis	cerebellum	SCAN
rs17529304	MGC9084	cis	multi-tissue	Pritchard
rs17529304	C1orf156	cis	lesional skin	skin_eQTL
rs17529304	METTL18	cis	Stomach	GTEx
rs17529304	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs17529304	METTL18	cis	lung	GTEx
rs17529304	METTL18	cis	Nerve Tibial	GTEx
rs17529304	METTL18	cis	Esophagus Muscularis	GTEx
rs17529304	SFT2D2	cis	cerebellum	SCAN
rs17529304	METTL18	cis	Adipose Subcutaneous	GTEx
rs17529304	C1orf156	cis	uninvolved skin	skin_eQTL
rs17529304	KIFAP3	cis	parietal	SCAN
rs17529304	METTL18	cis	Muscle Skeletal	GTEx
rs17529304	METTL18	cis	Esophagus Mucosa	GTEx
rs17529304	TIPRL	cis	cerebellum	SCAN
rs17529304	METTL18	cis	Thyroid	GTEx
rs17529304	METTL18	cis	Heart Left Ventricle	GTEx
rs17529304	C1orf156	cis	cerebellum	SCAN
rs17529304	METTL18	cis	Artery Aorta	GTEx
rs17529304	KIFAP3	cis	cerebellum	SCAN
rs17529304	C1orf156	cis	parietal	SCAN
rs17529304	C1orf156	cis	lymphoblastoid	seeQTL
rs17529304	METTL18	cis	Artery Tibial	GTEx
rs17529304	C1orf112	cis	cerebellum	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169764600-169782400	Weak transcription	Pancreas	Pancrea
2	chr1:169764800-169793200	Weak transcription	Aorta	Aorta
3	chr1:169764800-169793200	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:169764800-169793400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:169764800-169795200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:169764800-169796200	Weak transcription	Spleen	Spleen
7	chr1:169764800-169818200	Weak transcription	Esophagus	oesophagus
8	chr1:169764800-169818200	Weak transcription	Lung	lung
9	chr1:169764800-169823600	Weak transcription	Gastric	stomach
10	chr1:169765000-169786000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:169765000-169793200	Weak transcription	Fetal Brain Male	brain
12	chr1:169765000-169808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:169765000-169821800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:169765200-169781600	Weak transcription	Brain Substantia Nigra	brain
15	chr1:169765200-169783200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:169765200-169793200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:169765200-169793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:169765200-169793400	Weak transcription	Fetal Kidney	kidney
19	chr1:169765200-169797400	Weak transcription	HSMMtube	muscle
20	chr1:169765200-169802000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:169765200-169807800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:169765200-169808000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:169765200-169809000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr1:169765200-169814800	Weak transcription	Brain Anterior Caudate	brain
25	chr1:169765200-169815200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr1:169765200-169818800	Weak transcription	Brain Angular Gyrus	brain
27	chr1:169765200-169820600	Weak transcription	Psoas Muscle	Psoas
28	chr1:169765200-169823400	Weak transcription	Right Ventricle	heart
29	chr1:169765400-169788200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr1:169765400-169796800	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:169765400-169798400	Weak transcription	Brain Germinal Matrix	brain
32	chr1:169765400-169798400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:169765400-169808000	Weak transcription	Fetal Heart	heart
34	chr1:169765400-169822600	Weak transcription	Colonic Mucosa	Colon
35	chr1:169765600-169783800	Weak transcription	Fetal Intestine Small	intestine
36	chr1:169765600-169808000	Weak transcription	Small Intestine	intestine
37	chr1:169765600-169818200	Weak transcription	NHLF	lung
38	chr1:169765800-169793200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr1:169765800-169808000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:169765800-169815200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr1:169765800-169818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr1:169766000-169796800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:169766000-169797000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:169766000-169797400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr1:169769400-169785800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:169770400-169785000	Strong transcription	Dnd41	blood
47	chr1:169771200-169785800	Strong transcription	Fetal Thymus	thymus
48	chr1:169771800-169784600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:169772400-169784600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:169773400-169796200	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

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