The 2.0 version of rSNPBase

Variant report

Variant rs12138861
Chromosome Location chr1:169775624-169775625
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169764600-169782400 Weak transcription Pancreas Pancrea
2 chr1:169764800-169793200 Weak transcription Aorta Aorta
3 chr1:169764800-169793200 Weak transcription Brain Hippocampus Middle brain
4 chr1:169764800-169793400 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:169764800-169795200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr1:169764800-169796200 Weak transcription Spleen Spleen
7 chr1:169764800-169818200 Weak transcription Esophagus oesophagus
8 chr1:169764800-169818200 Weak transcription Lung lung
9 chr1:169764800-169823600 Weak transcription Gastric stomach
10 chr1:169765000-169776000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:169765000-169786000 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr1:169765000-169793200 Weak transcription Fetal Brain Male brain
13 chr1:169765000-169808000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr1:169765000-169821800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:169765200-169776600 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:169765200-169779600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:169765200-169781200 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr1:169765200-169781600 Weak transcription Brain Substantia Nigra brain
19 chr1:169765200-169783200 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:169765200-169793200 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:169765200-169793200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:169765200-169793400 Weak transcription Fetal Kidney kidney
23 chr1:169765200-169797400 Weak transcription HSMMtube muscle
24 chr1:169765200-169802000 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:169765200-169807800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr1:169765200-169808000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr1:169765200-169809000 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr1:169765200-169814800 Weak transcription Brain Anterior Caudate brain
29 chr1:169765200-169815200 Weak transcription Rectal Smooth Muscle rectum
30 chr1:169765200-169818800 Weak transcription Brain Angular Gyrus brain
31 chr1:169765200-169820600 Weak transcription Psoas Muscle Psoas
32 chr1:169765200-169823400 Weak transcription Right Ventricle heart
33 chr1:169765400-169788200 Weak transcription Placenta Amnion Placenta Amnion
34 chr1:169765400-169796800 Weak transcription Colon Smooth Muscle Colon
35 chr1:169765400-169798400 Weak transcription Brain Germinal Matrix brain
36 chr1:169765400-169798400 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:169765400-169808000 Weak transcription Fetal Heart heart
38 chr1:169765400-169822600 Weak transcription Colonic Mucosa Colon
39 chr1:169765600-169783800 Weak transcription Fetal Intestine Small intestine
40 chr1:169765600-169808000 Weak transcription Small Intestine intestine
41 chr1:169765600-169818200 Weak transcription NHLF lung
42 chr1:169765800-169793200 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:169765800-169808000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:169765800-169815200 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:169765800-169818400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr1:169766000-169796800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:169766000-169797000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr1:169766000-169797400 Weak transcription Muscle Satellite Cultured Cells --
49 chr1:169769400-169785800 Strong transcription HUES64 Cell Line embryonic stem cell
50 chr1:169770400-169785000 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015