Variant report

Variant	rs2474698
Chromosome Location	chr1:169954573-169954574
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169953487..169956228-chr1:169957640..169960024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235378	Chromatin interaction

Extended variants
information (count: 324 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:312)

rs_ID	r²[population]
rs1046058	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10489173	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10489174	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10489176	1.00[CEU][hapmap]
rs10494479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800489	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10919253	0.82[EUR][1000 genomes]
rs12116524	0.82[EUR][1000 genomes]
rs12116601	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12116650	0.82[EUR][1000 genomes]
rs12117794	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12118080	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118431	0.82[EUR][1000 genomes]
rs12118559	0.82[EUR][1000 genomes]
rs12118739	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119368	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12119386	0.82[EUR][1000 genomes]
rs12119447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119635	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12119665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120114	0.82[EUR][1000 genomes]
rs12120229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120727	0.82[EUR][1000 genomes]
rs12121045	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12121371	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121443	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12121451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121614	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12121797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122419	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12122606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122767	0.82[EUR][1000 genomes]
rs12122885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123432	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12123483	0.82[EUR][1000 genomes]
rs12123686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123806	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12123835	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12123865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124032	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124561	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124750	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12124775	0.82[EUR][1000 genomes]
rs12124907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125595	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12125679	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12126591	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12127120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127174	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127211	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12127500	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12127911	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128126	1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128308	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12128929	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12129052	0.83[EUR][1000 genomes]
rs12129164	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129951	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12130150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130263	0.83[EUR][1000 genomes]
rs12130417	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130472	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130561	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131192	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12131206	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131357	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12131444	0.82[EUR][1000 genomes]
rs12131603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132222	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12132384	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12132633	0.83[CEU][hapmap]
rs12132892	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133074	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12133108	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133369	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133849	0.80[EUR][1000 genomes]
rs12134837	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12134886	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12135057	0.82[EUR][1000 genomes]
rs12135355	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135361	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12135436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135559	0.82[EUR][1000 genomes]
rs12135642	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12135726	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12136425	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12136554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137279	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12137873	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138083	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138861	0.82[EUR][1000 genomes]
rs12139141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139629	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140134	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140656	0.82[EUR][1000 genomes]
rs12140984	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12141317	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12141377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141428	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141572	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12141613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141680	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142093	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12142355	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12142459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142511	0.82[EUR][1000 genomes]
rs12142959	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142961	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143057	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12143161	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs12143204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143260	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12143301	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12143739	0.80[EUR][1000 genomes]
rs12143781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144122	0.86[EUR][1000 genomes]
rs12144204	0.82[EUR][1000 genomes]
rs12144207	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12144599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144624	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12144683	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12145295	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145417	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12145458	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12145562	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145574	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12145614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146043	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1321657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496	0.82[EUR][1000 genomes]
rs16828222	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16862751	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs16862894	0.81[AFR][1000 genomes]
rs16862898	1.00[YRI][hapmap]
rs16862900	1.00[YRI][hapmap]
rs16862913	1.00[YRI][hapmap]
rs16862919	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862938	1.00[YRI][hapmap]
rs16862956	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862967	1.00[YRI][hapmap]
rs16862968	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16862971	1.00[YRI][hapmap]
rs17345663	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17349740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529304	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17529791	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17543370	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17543611	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17543730	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17544586	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17544823	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17601414	0.82[EUR][1000 genomes]
rs17601582	0.82[EUR][1000 genomes]
rs17601631	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17602051	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17602072	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17602701	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17603570	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17603666	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2057249	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2093050	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145046	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2183418	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272919	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2272920	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2272921	0.81[EUR][1000 genomes]
rs2421109	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474697	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2474701	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2474704	0.88[EUR][1000 genomes]
rs2474705	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474706	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2750018	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2750019	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806384	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806385	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806387	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806389	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806390	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2806392	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs28652825	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3766135	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3766141	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3766143	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3766152	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41272481	0.82[EUR][1000 genomes]
rs41304562	0.82[EUR][1000 genomes]
rs4385776	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs476485	0.88[EUR][1000 genomes]
rs478116	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs483103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs486431	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs490469	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs490776	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495092	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs495642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510681	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517649	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs518928	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs520990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521165	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522017	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs536080	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537976	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541711	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs544008	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs545284	0.88[EUR][1000 genomes]
rs545954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs545963	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549537	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs553209	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs554060	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs557475	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558540	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558782	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs559969	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560414	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs562054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565397	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs565626	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs571806	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs575147	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs576225	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs578916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57952001	0.83[EUR][1000 genomes]
rs579553	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs582900	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs583604	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590181	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs591202	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs591559	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs593406	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs595984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598763	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs601355	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs602556	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606047	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606409	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606695	0.83[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612548	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs615485	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs615915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618149	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs618692	0.83[CEU][hapmap]
rs629408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs629593	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs630179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642352	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6427231	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs644834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646730	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647113	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs648502	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs654664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655133	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs655474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656334	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs656848	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs657254	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs659363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661516	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664598	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs664962	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs665774	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6681685	0.83[EUR][1000 genomes]
rs671921	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs672843	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs673280	0.83[EUR][1000 genomes]
rs673656	1.00[CHB][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673789	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs674896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676020	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs677630	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680269	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs685155	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs686519	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs686911	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs687195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7411424	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122419	0.86[EUR][1000 genomes]
rs7549000	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs850771	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9426888	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645328	0.82[EUR][1000 genomes]
rs9645329	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1013271	chr1:169892661-169960549	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997289	chr1:169899427-169960549	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1012520	chr1:169899427-169969444	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1001670	chr1:169901733-169956450	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1004999	chr1:169901733-169960549	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1005982	chr1:169913597-169958219	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1001013	chr1:169913597-169960549	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1008890	chr1:169917450-169956450	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1009789	chr1:169917450-169960549	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1010370	chr1:169917450-169980951	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1012534	chr1:169924759-169965106	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs2474698	METTL18	cis	lung	GTEx
rs2474698	C1orf156	cis	uninvolved skin	skin_eQTL
rs2474698	METTL18	cis	Heart Left Ventricle	GTEx
rs2474698	METTL18	cis	Thyroid	GTEx
rs2474698	METTL18	cis	Esophagus Mucosa	GTEx
rs2474698	METTL18	cis	Artery Aorta	GTEx
rs2474698	MGC9084	cis	multi-tissue	Pritchard
rs2474698	C1orf156	Cis_1M	lymphoblastoid	RTeQTL
rs2474698	METTL18	cis	Nerve Tibial	GTEx
rs2474698	METTL18	cis	Muscle Skeletal	GTEx
rs2474698	METTL18	cis	Adipose Subcutaneous	GTEx
rs2474698	C1orf156	cis	lesional skin	skin_eQTL
rs2474698	METTL18	cis	Artery Tibial	GTEx
rs2474698	METTL18	cis	Esophagus Muscularis	GTEx

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169904000-170010400	Weak transcription	Aorta	Aorta
2	chr1:169911800-169968400	Weak transcription	Psoas Muscle	Psoas
3	chr1:169912000-169966000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:169912000-169968600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:169912800-169967200	Weak transcription	NHDF-Ad	bronchial
6	chr1:169913800-169968400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:169914000-169968400	Weak transcription	Ovary	ovary
8	chr1:169914600-169961800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:169914600-169968000	Weak transcription	Fetal Stomach	stomach
10	chr1:169914800-169984000	Weak transcription	Left Ventricle	heart
11	chr1:169914800-169984800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:169914800-169988800	Weak transcription	Fetal Intestine Small	intestine
13	chr1:169921600-169968400	Weak transcription	Fetal Brain Male	brain
14	chr1:169922000-169984000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:169922200-169968400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:169922400-169996400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:169930400-169968400	Weak transcription	Small Intestine	intestine
18	chr1:169935600-169968400	Weak transcription	Fetal Kidney	kidney
19	chr1:169937600-169956600	Weak transcription	Pancreas	Pancrea
20	chr1:169938000-169968400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:169938200-169965400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:169938800-169962200	Weak transcription	Esophagus	oesophagus
23	chr1:169939000-169968400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:169939200-169967400	Weak transcription	Osteobl	bone
25	chr1:169944800-169954600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:169944800-169968000	Weak transcription	Brain Substantia Nigra	brain
27	chr1:169944800-169989600	Weak transcription	Thymus	Thymus
28	chr1:169945400-169968400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:169945800-169975000	Weak transcription	GM12878-XiMat	blood
30	chr1:169946400-169968400	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:169947000-169968000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:169947200-169968000	Weak transcription	Brain Anterior Caudate	brain
33	chr1:169948200-169959800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:169948800-169968200	Weak transcription	HSMMtube	muscle
35	chr1:169949400-169968000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:169951200-169967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:169951600-169965800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr1:169951600-170011800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr1:169951800-169961800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr1:169951800-169965800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:169951800-169975000	Weak transcription	Dnd41	blood
42	chr1:169951800-169975200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr1:169951800-169984800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr1:169952000-169965600	Weak transcription	Primary T cells from cord blood	blood
45	chr1:169952000-169983200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr1:169952000-169984600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:169952000-169985200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr1:169952000-170018000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:169952200-169958000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr1:169952200-169983000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

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