The 2.0 version of rSNPBase

Variant report

Variant rs12135436
Chromosome Location chr1:170017249-170017250
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952000-170018000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
3 chr1:169968800-170020200 Weak transcription Brain Angular Gyrus brain
4 chr1:169969600-170017800 Weak transcription Esophagus oesophagus
5 chr1:169979400-170018000 Weak transcription Brain Cingulate Gyrus brain
6 chr1:169982400-170020600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:169983800-170017600 Weak transcription Spleen Spleen
8 chr1:169984600-170020800 Weak transcription Gastric stomach
9 chr1:169984800-170027600 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr1:169985200-170020400 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr1:169986400-170019800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr1:169988000-170017600 Weak transcription Fetal Lung lung
13 chr1:169989600-170019800 Weak transcription Right Ventricle heart
14 chr1:169993600-170021400 Weak transcription Fetal Brain Male brain
15 chr1:169995400-170017800 Weak transcription Pancreas Pancrea
16 chr1:169997800-170017600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:169997800-170018600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:169999800-170017600 Weak transcription Colonic Mucosa Colon
19 chr1:169999800-170036600 Weak transcription Small Intestine intestine
20 chr1:170001800-170017400 Weak transcription NH-A brain
21 chr1:170002800-170036400 Weak transcription NHDF-Ad bronchial
22 chr1:170003000-170017800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr1:170003200-170017600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:170003600-170027600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr1:170005000-170017800 Weak transcription Fetal Intestine Small intestine
26 chr1:170005000-170020200 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr1:170005200-170025200 Weak transcription Brain Substantia Nigra brain
28 chr1:170005600-170019400 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:170006000-170018000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:170007000-170017400 Weak transcription Primary monocytes fromperipheralblood blood
31 chr1:170007000-170026200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:170007200-170017800 Weak transcription Fetal Brain Female brain
33 chr1:170007600-170031800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:170008200-170032200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:170008400-170017800 Weak transcription Liver Liver
36 chr1:170008600-170020400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:170008800-170031800 Weak transcription Placenta Amnion Placenta Amnion
38 chr1:170009600-170018200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr1:170009600-170019600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:170009600-170019800 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:170010200-170019000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:170010600-170018800 Strong transcription Dnd41 blood
43 chr1:170010600-170019400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr1:170011000-170018000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:170011200-170017600 Weak transcription Fetal Stomach stomach
46 chr1:170011200-170017800 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:170011200-170018000 Weak transcription Thymus Thymus
48 chr1:170011200-170018400 Weak transcription Fetal Thymus thymus
49 chr1:170011600-170017600 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:170011600-170018000 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015