The 2.0 version of rSNPBase

Variant report

Variant rs12138083
Chromosome Location chr1:170024788-170024789
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:169984800-170027600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:169999800-170036600 Weak transcription Small Intestine intestine
4 chr1:170002800-170036400 Weak transcription NHDF-Ad bronchial
5 chr1:170003600-170027600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:170005200-170025200 Weak transcription Brain Substantia Nigra brain
7 chr1:170007000-170026200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:170007600-170031800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:170008200-170032200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:170008800-170031800 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:170012200-170027000 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:170014000-170025600 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:170014000-170032200 Weak transcription Left Ventricle heart
14 chr1:170014600-170025200 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr1:170014600-170031400 Weak transcription GM12878-XiMat blood
16 chr1:170016000-170031000 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr1:170016000-170031400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:170016400-170025800 Weak transcription Primary B cells from cord blood blood
19 chr1:170017200-170025600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:170018200-170025400 Weak transcription Brain Hippocampus Middle brain
21 chr1:170018200-170026200 Weak transcription Esophagus oesophagus
22 chr1:170018200-170042400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:170018600-170035800 Weak transcription Liver Liver
24 chr1:170018800-170026000 Weak transcription Primary B cells from peripheral blood blood
25 chr1:170018800-170026400 Weak transcription Adipose Nuclei Adipose
26 chr1:170018800-170026800 Weak transcription Dnd41 blood
27 chr1:170018800-170027400 Weak transcription Fetal Brain Female brain
28 chr1:170018800-170032200 Weak transcription Ovary ovary
29 chr1:170018800-170034600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:170018800-170037000 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:170018800-170040600 Weak transcription Aorta Aorta
32 chr1:170019000-170025400 Weak transcription Stomach Smooth Muscle stomach
33 chr1:170019000-170026000 Weak transcription Fetal Muscle Trunk muscle
34 chr1:170019000-170027200 Weak transcription Brain Germinal Matrix brain
35 chr1:170019000-170027400 Weak transcription Spleen Spleen
36 chr1:170019000-170027600 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr1:170019000-170027600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr1:170019000-170035600 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:170019000-170037000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:170019000-170041400 Weak transcription Colon Smooth Muscle Colon
41 chr1:170019000-170042600 Weak transcription Thymus Thymus
42 chr1:170019200-170036800 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:170019200-170042400 Weak transcription Fetal Lung lung
44 chr1:170019400-170025200 Weak transcription Fetal Heart heart
45 chr1:170019400-170025600 Weak transcription Primary T cells fromperipheralblood blood
46 chr1:170019600-170025800 Weak transcription Primary hematopoietic stem cells blood
47 chr1:170020200-170031200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:170023400-170024800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr1:170023600-170026200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:170024000-170036400 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015