The 2.0 version of rSNPBase

Variant report

Variant rs12133172
Chromosome Location chr1:170036120-170036121
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169952400-170043000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:169999800-170036600 Weak transcription Small Intestine intestine
3 chr1:170002800-170036400 Weak transcription NHDF-Ad bronchial
4 chr1:170018200-170042400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:170018800-170037000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr1:170018800-170040600 Weak transcription Aorta Aorta
7 chr1:170019000-170037000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:170019000-170041400 Weak transcription Colon Smooth Muscle Colon
9 chr1:170019000-170042600 Weak transcription Thymus Thymus
10 chr1:170019200-170036800 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:170019200-170042400 Weak transcription Fetal Lung lung
12 chr1:170024000-170036400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:170024400-170037800 Weak transcription Primary T cells from cord blood blood
14 chr1:170024600-170036800 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr1:170027800-170036600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:170032600-170036600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:170032600-170036600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:170032800-170036400 Weak transcription Psoas Muscle Psoas
19 chr1:170032800-170036600 Weak transcription Left Ventricle heart
20 chr1:170032800-170036600 Weak transcription Ovary ovary
21 chr1:170032800-170037000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:170032800-170040600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr1:170032800-170042400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:170032800-170042600 Weak transcription Placenta Amnion Placenta Amnion
25 chr1:170033600-170036600 Weak transcription HMEC breast
26 chr1:170033800-170040800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr1:170033800-170042400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:170034200-170036400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr1:170034200-170040200 Weak transcription Brain Germinal Matrix brain
30 chr1:170035000-170036400 Enhancers NHEK skin
31 chr1:170035200-170036400 Active TSS GM12878-XiMat blood
32 chr1:170035200-170037200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:170035400-170036200 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr1:170035600-170037400 Enhancers K562 blood
35 chr1:170035600-170037600 Enhancers Dnd41 blood
36 chr1:170035800-170036200 Enhancers Liver Liver
37 chr1:170035800-170037000 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr1:170035800-170038600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:170035800-170038800 Enhancers Primary T helper cells PMA-I stimulated --
40 chr1:170036000-170036400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:170036000-170036400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:170036000-170037800 Enhancers Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015