Variant report

Variant	rs16875079
Chromosome Location	chr8:107791095-107791096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11990338	0.94[ASN][1000 genomes]
rs11996457	0.92[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs12056528	0.90[ASN][1000 genomes]
rs12675956	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs12676199	0.83[ASN][1000 genomes]
rs12681427	0.92[CHB][hapmap]
rs12681916	0.86[ASN][1000 genomes]
rs1542644	0.92[CHB][hapmap]
rs2126579	0.92[CHB][hapmap];0.82[CHD][hapmap]
rs2881423	0.90[CHB][hapmap]
rs3101531	0.92[CHB][hapmap]
rs3101538	0.82[CHD][hapmap]
rs3102432	0.91[CHB][hapmap];0.82[CHD][hapmap]
rs3102434	0.92[CHB][hapmap];0.82[CHD][hapmap]
rs3132806	0.92[CHB][hapmap]
rs6983210	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs7817274	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:107789800-107791600	Enhancers	Psoas Muscle	Psoas
3	chr8:107790000-107791200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr8:107790000-107791600	Enhancers	Fetal Heart	heart
5	chr8:107790200-107791200	Enhancers	NHEK	skin
6	chr8:107790200-107791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:107790400-107791200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:107790400-107791200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:107790400-107791400	Enhancers	Fetal Muscle Leg	muscle
10	chr8:107790400-107791400	Enhancers	Gastric	stomach
11	chr8:107790400-107791400	Enhancers	Pancreas	Pancrea
12	chr8:107790400-107791400	Enhancers	Hela-S3	cervix
13	chr8:107790400-107792200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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