Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107789517..107792375-chr8:107794903..107797817,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11996457	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];0.88[ASN][1000 genomes]
rs12056528	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12675956	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12676199	0.86[ASN][1000 genomes]
rs12681427	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12681916	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542644	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16875079	0.94[ASN][1000 genomes]
rs1954790	0.82[ASN][1000 genomes]
rs2126579	1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap]
rs2881423	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs3101531	1.00[CHB][hapmap]
rs3101538	0.84[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap]
rs3102432	1.00[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap]
rs3102434	1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap]
rs3132806	1.00[CHB][hapmap]
rs6469077	0.82[ASN][1000 genomes]
rs6983111	0.82[ASN][1000 genomes]
rs6983210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817274	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:107789800-107791600	Enhancers	Psoas Muscle	Psoas
3	chr8:107790000-107791200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr8:107790000-107791600	Enhancers	Fetal Heart	heart
5	chr8:107790200-107791200	Enhancers	NHEK	skin
6	chr8:107790200-107791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:107790400-107790800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:107790400-107790800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:107790400-107790800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr8:107790400-107790800	Bivalent Enhancer	HMEC	breast
11	chr8:107790400-107791200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107790400-107791200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr8:107790400-107791400	Enhancers	Fetal Muscle Leg	muscle
14	chr8:107790400-107791400	Enhancers	Gastric	stomach
15	chr8:107790400-107791400	Enhancers	Pancreas	Pancrea
16	chr8:107790400-107791400	Enhancers	Hela-S3	cervix
17	chr8:107790400-107792200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:107790600-107791000	Enhancers	HSMM	muscle

Quick Search: