Variant report

Variant	rs1954790
Chromosome Location	chr8:107756427-107756428
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11988518	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11990338	0.82[ASN][1000 genomes]
rs11996457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12056528	0.85[ASN][1000 genomes]
rs12675956	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12676199	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12681427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12681916	0.90[ASN][1000 genomes]
rs1542644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126579	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2881423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101531	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3101532	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101533	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101534	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3101538	0.84[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101539	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102431	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3102432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3102434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110429	0.82[ASN][1000 genomes]
rs3132806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3132807	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3134127	0.86[ASN][1000 genomes]
rs3134129	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983111	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983210	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7000202	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7817274	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107762400	Weak transcription	Lung	lung
2	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
3	chr8:107719600-107775200	Weak transcription	Gastric	stomach
4	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
5	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:107739000-107775200	Weak transcription	A549	lung
8	chr8:107739200-107760800	Weak transcription	Fetal Stomach	stomach
9	chr8:107740000-107759600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:107740000-107775200	Weak transcription	Ovary	ovary
11	chr8:107740200-107767400	Weak transcription	K562	blood
12	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
13	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
14	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
15	chr8:107747000-107757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
17	chr8:107747600-107757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr8:107748600-107760400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr8:107749000-107761200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr8:107749200-107765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:107749400-107775200	Weak transcription	HMEC	breast
22	chr8:107749600-107756600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr8:107749800-107760800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr8:107750600-107758600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:107751000-107764800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:107751400-107756600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr8:107751400-107757000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr8:107751400-107757200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr8:107751400-107757400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr8:107751400-107758000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:107751600-107756600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr8:107751600-107756600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:107751600-107756600	Strong transcription	Liver	Liver
34	chr8:107751600-107756600	Strong transcription	Fetal Lung	lung
35	chr8:107751600-107757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:107751600-107757000	Strong transcription	Placenta	Placenta
37	chr8:107751600-107757400	Strong transcription	Adipose Nuclei	Adipose
38	chr8:107751600-107757800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr8:107751600-107757800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:107751600-107761000	Strong transcription	Primary B cells from cord blood	blood
41	chr8:107751600-107763000	Weak transcription	HSMMtube	muscle
42	chr8:107751800-107756600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:107751800-107757000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:107751800-107757200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr8:107752600-107756600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr8:107752600-107756600	Strong transcription	Fetal Intestine Large	intestine
47	chr8:107752600-107756600	Strong transcription	Fetal Kidney	kidney
48	chr8:107752600-107757000	Strong transcription	Fetal Thymus	thymus
49	chr8:107752800-107757400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr8:107753000-107762800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links