Variant report

Variant	rs6469077
Chromosome Location	chr8:107766196-107766197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11988518	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11990338	0.82[ASN][1000 genomes]
rs11996457	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12056528	0.85[ASN][1000 genomes]
rs12675956	0.85[ASN][1000 genomes]
rs12676199	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12681427	1.00[ASN][1000 genomes]
rs12681916	0.90[ASN][1000 genomes]
rs1542644	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126579	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2881423	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101532	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101533	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101534	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101538	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3101539	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3102431	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3102432	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3102434	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3110429	0.82[ASN][1000 genomes]
rs3132806	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3132807	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3134127	0.86[ASN][1000 genomes]
rs3134129	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6983111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983210	0.89[ASN][1000 genomes]
rs7000202	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7817274	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107719600-107775200	Weak transcription	Gastric	stomach
2	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
3	chr8:107739000-107775200	Weak transcription	A549	lung
4	chr8:107740000-107775200	Weak transcription	Ovary	ovary
5	chr8:107740200-107767400	Weak transcription	K562	blood
6	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
7	chr8:107740800-107775200	Weak transcription	Brain Substantia Nigra	brain
8	chr8:107741000-107768200	Weak transcription	Brain Germinal Matrix	brain
9	chr8:107747000-107768000	Weak transcription	Small Intestine	intestine
10	chr8:107749400-107775200	Weak transcription	HMEC	breast
11	chr8:107753200-107771400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr8:107753600-107777400	Weak transcription	HUVEC	blood vessel
13	chr8:107753800-107775200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:107754200-107775200	Weak transcription	Pancreas	Pancrea
15	chr8:107754400-107766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:107754800-107775200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:107755200-107772000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:107755400-107771600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:107755800-107771200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:107755800-107777800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:107756000-107775000	Weak transcription	Fetal Heart	heart
22	chr8:107756400-107766800	Weak transcription	Primary T cells from cord blood	blood
23	chr8:107756400-107767000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:107756400-107772400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:107756400-107775000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:107756400-107777800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:107756600-107769800	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:107756600-107771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr8:107756600-107772000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr8:107756600-107772200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr8:107756600-107772400	Weak transcription	Left Ventricle	heart
32	chr8:107756600-107772800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:107756600-107775200	Weak transcription	Brain Angular Gyrus	brain
34	chr8:107756600-107775200	Weak transcription	Brain Anterior Caudate	brain
35	chr8:107756600-107775200	Weak transcription	Fetal Intestine Large	intestine
36	chr8:107756600-107775200	Weak transcription	Fetal Kidney	kidney
37	chr8:107756600-107775200	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:107756600-107775200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:107756600-107777400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:107756600-107777400	Weak transcription	Psoas Muscle	Psoas
41	chr8:107756600-107777600	Weak transcription	Fetal Brain Female	brain
42	chr8:107756800-107766600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:107756800-107775200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:107756800-107775200	Weak transcription	Osteobl	bone
45	chr8:107757000-107768600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:107757200-107771400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:107757200-107775200	Weak transcription	NHDF-Ad	bronchial
48	chr8:107757600-107771400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:107757800-107769000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr8:107758000-107771200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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