Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11988518	0.83[ASN][1000 genomes]
rs11990338	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11996457	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12056528	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676199	0.90[ASN][1000 genomes]
rs12681427	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12681916	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1542644	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs16875079	0.90[ASN][1000 genomes]
rs1954790	0.85[ASN][1000 genomes]
rs2126579	1.00[CHB][hapmap]
rs2881423	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs3101531	1.00[CHB][hapmap]
rs3101538	0.84[CHB][hapmap]
rs3102432	1.00[CHB][hapmap]
rs3102434	1.00[CHB][hapmap]
rs3132806	1.00[CHB][hapmap]
rs6469077	0.85[ASN][1000 genomes]
rs6983111	0.85[ASN][1000 genomes]
rs6983210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7817274	1.00[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107783200-107798400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:107785400-107789800	Weak transcription	Psoas Muscle	Psoas
3	chr8:107785400-107790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:107785600-107790400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107785800-107790000	Weak transcription	Fetal Heart	heart

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