Variant report

Variant	rs11996457
Chromosome Location	chr8:107782335-107782336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11988518	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11990338	0.88[ASN][1000 genomes]
rs11996466	0.83[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12056528	0.92[ASN][1000 genomes]
rs12675956	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12676199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12681427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12681916	0.96[ASN][1000 genomes]
rs1542644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16875079	0.85[ASN][1000 genomes]
rs1954790	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2126579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2881423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3101531	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3101532	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3101533	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3101534	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3101538	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3101539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3102431	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3102432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3102434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3132806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3132807	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134127	0.82[ASN][1000 genomes]
rs3134129	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6469077	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6983111	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6983210	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs7000202	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7817274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1032991	chr8:107756661-107819035	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv611846	chr8:107778324-107819368	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107740200-107783800	Weak transcription	Fetal Brain Male	brain
2	chr8:107776000-107785000	Weak transcription	HSMMtube	muscle
3	chr8:107776800-107782800	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr8:107777200-107782600	Active TSS	Right Atrium	heart
5	chr8:107777400-107782600	Active TSS	Right Ventricle	heart
6	chr8:107777600-107784600	Weak transcription	HUVEC	blood vessel
7	chr8:107777800-107784000	Weak transcription	Fetal Kidney	kidney
8	chr8:107777800-107785000	Weak transcription	NHLF	lung
9	chr8:107778000-107782600	Active TSS	Left Ventricle	heart
10	chr8:107778000-107784600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:107778000-107785000	Weak transcription	Fetal Lung	lung
12	chr8:107778200-107785000	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:107778400-107784800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr8:107779000-107782400	Active TSS	Fetal Muscle Leg	muscle
15	chr8:107779000-107784200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:107779200-107785000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:107779800-107785000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:107780800-107782600	Active TSS	Psoas Muscle	Psoas
19	chr8:107781600-107782400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
20	chr8:107781800-107782400	Flanking Active TSS	Fetal Heart	heart
21	chr8:107782000-107782600	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links