Variant report

Variant	rs16882266
Chromosome Location	chr8:34326319-34326320
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10089410	1.00[ASN][1000 genomes]
rs10092484	1.00[ASN][1000 genomes]
rs10099704	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10099911	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100213	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100329	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10108508	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10111870	1.00[ASN][1000 genomes]
rs10217066	1.00[ASN][1000 genomes]
rs11994160	1.00[ASN][1000 genomes]
rs12334566	1.00[ASN][1000 genomes]
rs13274419	0.81[AFR][1000 genomes]
rs16882055	1.00[ASN][1000 genomes]
rs16882365	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16882528	1.00[ASN][1000 genomes]
rs2719272	1.00[ASN][1000 genomes]
rs28407707	1.00[ASN][1000 genomes]
rs28505609	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34005391	1.00[ASN][1000 genomes]
rs34564700	1.00[ASN][1000 genomes]
rs35112066	1.00[ASN][1000 genomes]
rs6468269	1.00[ASN][1000 genomes]
rs67406212	1.00[ASN][1000 genomes]
rs67908341	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6988455	0.81[AFR][1000 genomes]
rs6988783	1.00[ASN][1000 genomes]
rs7000467	1.00[ASN][1000 genomes]
rs7009639	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7014310	0.88[AMR][1000 genomes]
rs71513723	1.00[ASN][1000 genomes]
rs72640903	1.00[ASN][1000 genomes]
rs72640915	1.00[ASN][1000 genomes]
rs72640931	1.00[ASN][1000 genomes]
rs72640933	1.00[ASN][1000 genomes]
rs72640961	1.00[ASN][1000 genomes]
rs72640962	1.00[ASN][1000 genomes]
rs72644259	1.00[ASN][1000 genomes]
rs7815445	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6147	chr8:34314029-34359124	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16882266	FGFR1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34325600-34327200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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