Variant report

Variant	rs16892171
Chromosome Location	chr6:161549756-161549757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161548242..161551323-chr6:161565381..161568765,4	K562	blood:
2	chr6:161548339..161550868-chr6:161560378..161562313,2	K562	blood:
3	chr6:161411333..161414575-chr6:161549147..161553015,4	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10080366	1.00[AMR][1000 genomes]
rs12181932	1.00[AMR][1000 genomes]
rs12333168	1.00[AMR][1000 genomes]
rs13437252	1.00[AMR][1000 genomes]
rs16892148	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892155	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892160	1.00[AMR][1000 genomes]
rs28542460	1.00[AMR][1000 genomes]
rs58963158	1.00[AMR][1000 genomes]
rs6455705	1.00[AMR][1000 genomes]
rs6928749	1.00[AMR][1000 genomes]
rs6930167	1.00[AMR][1000 genomes]
rs6934713	1.00[AMR][1000 genomes]
rs6937754	1.00[AMR][1000 genomes]
rs73022077	1.00[AMR][1000 genomes]
rs73024033	1.00[AMR][1000 genomes]
rs7356869	1.00[AMR][1000 genomes]
rs7754687	1.00[AMR][1000 genomes]
rs7767689	1.00[AMR][1000 genomes]
rs7767849	1.00[AMR][1000 genomes]
rs7775116	1.00[AMR][1000 genomes]
rs9295135	1.00[AMR][1000 genomes]
rs9456609	1.00[AMR][1000 genomes]
rs9456610	1.00[AMR][1000 genomes]
rs9456611	1.00[AMR][1000 genomes]
rs9456612	1.00[AMR][1000 genomes]
rs9456613	1.00[AMR][1000 genomes]
rs9456614	1.00[AMR][1000 genomes]
rs9456618	1.00[AMR][1000 genomes]
rs9456627	1.00[AMR][1000 genomes]
rs9456630	1.00[AMR][1000 genomes]
rs9458076	1.00[AMR][1000 genomes]
rs9458077	1.00[AMR][1000 genomes]
rs9458079	1.00[AMR][1000 genomes]
rs9458080	1.00[AMR][1000 genomes]
rs9458081	1.00[AMR][1000 genomes]
rs9458082	1.00[AMR][1000 genomes]
rs9458084	1.00[AMR][1000 genomes]
rs9458085	1.00[AMR][1000 genomes]
rs9458088	1.00[AMR][1000 genomes]
rs9458090	1.00[AMR][1000 genomes]
rs9458091	1.00[AMR][1000 genomes]
rs9458092	1.00[AMR][1000 genomes]
rs9458093	1.00[AMR][1000 genomes]
rs9458094	1.00[AMR][1000 genomes]
rs9458097	1.00[AMR][1000 genomes]
rs9458098	1.00[AMR][1000 genomes]
rs9458101	1.00[AMR][1000 genomes]
rs9458103	1.00[AMR][1000 genomes]
rs9458104	1.00[AMR][1000 genomes]
rs9458105	1.00[AMR][1000 genomes]
rs9458115	1.00[AMR][1000 genomes]
rs9458125	1.00[AMR][1000 genomes]
rs9458127	1.00[AMR][1000 genomes]
rs9458131	1.00[AMR][1000 genomes]
rs9458133	1.00[AMR][1000 genomes]
rs9458134	1.00[AMR][1000 genomes]
rs9986548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161534000-161549800	Weak transcription	Stomach Mucosa	stomach
2	chr6:161534600-161555800	Weak transcription	A549	lung
3	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:161537600-161556800	Weak transcription	Gastric	stomach
5	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:161538400-161553000	Weak transcription	Spleen	Spleen
7	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:161538400-161558400	Weak transcription	HMEC	breast
9	chr6:161538600-161552600	Weak transcription	Pancreas	Pancrea
10	chr6:161538600-161554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:161538600-161555600	Weak transcription	NHLF	lung
12	chr6:161538600-161559600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:161538800-161553000	Weak transcription	Colonic Mucosa	Colon
14	chr6:161538800-161554400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:161539600-161550800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:161539800-161556800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:161539800-161557200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:161540600-161552800	Weak transcription	HUVEC	blood vessel
19	chr6:161541000-161584600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:161541400-161562200	Weak transcription	NHDF-Ad	bronchial
21	chr6:161542000-161567200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:161542000-161585600	Weak transcription	Fetal Kidney	kidney
23	chr6:161543800-161552200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
24	chr6:161543800-161554400	Weak transcription	Fetal Heart	heart
25	chr6:161544600-161555800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:161544600-161589600	Weak transcription	Fetal Brain Male	brain
27	chr6:161544800-161553400	Weak transcription	Liver	Liver
28	chr6:161545000-161550000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:161545000-161555400	Weak transcription	Psoas Muscle	Psoas
30	chr6:161545000-161555600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:161545000-161584800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:161545800-161551600	Weak transcription	HepG2	liver
33	chr6:161546200-161550000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:161546200-161550200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:161546200-161550400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr6:161546200-161560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:161546400-161550200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:161546600-161555200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:161546800-161550200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:161547200-161550200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:161547400-161550000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:161547400-161550000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:161547400-161550200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:161547400-161550600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:161547400-161551600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr6:161547400-161551800	Strong transcription	Left Ventricle	heart
47	chr6:161547400-161552000	Strong transcription	Thymus	Thymus
48	chr6:161547400-161554000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:161547600-161550000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:161547600-161555600	Weak transcription	Brain Cingulate Gyrus	brain

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