Variant report

Variant	rs9458105
Chromosome Location	chr6:161455491-161455492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10080366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966001	1.00[EUR][1000 genomes]
rs12181932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13437252	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892148	1.00[AMR][1000 genomes]
rs16892155	1.00[AMR][1000 genomes]
rs16892160	1.00[AMR][1000 genomes]
rs16892171	1.00[AMR][1000 genomes]
rs1822519	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28493041	0.83[EUR][1000 genomes]
rs28542460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58963158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901507	1.00[EUR][1000 genomes]
rs6922585	1.00[EUR][1000 genomes]
rs6928749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935472	1.00[EUR][1000 genomes]
rs6935813	1.00[EUR][1000 genomes]
rs6936925	1.00[EUR][1000 genomes]
rs6937754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015405	1.00[EUR][1000 genomes]
rs73015418	0.83[EUR][1000 genomes]
rs73015443	0.83[EUR][1000 genomes]
rs73015456	0.83[EUR][1000 genomes]
rs73022077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73022082	1.00[EUR][1000 genomes]
rs73022084	0.86[EUR][1000 genomes]
rs73022090	1.00[EUR][1000 genomes]
rs73022096	1.00[EUR][1000 genomes]
rs73023854	0.83[EUR][1000 genomes]
rs73023856	0.83[EUR][1000 genomes]
rs73023871	1.00[EUR][1000 genomes]
rs73024033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024041	1.00[EUR][1000 genomes]
rs73024080	1.00[EUR][1000 genomes]
rs73026055	1.00[EUR][1000 genomes]
rs73026079	1.00[EUR][1000 genomes]
rs7356842	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7356869	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754196	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7754687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762953	1.00[EUR][1000 genomes]
rs7767689	1.00[AMR][1000 genomes]
rs7767849	1.00[AMR][1000 genomes]
rs7775116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775538	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9295133	1.00[EUR][1000 genomes]
rs9295135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456606	1.00[EUR][1000 genomes]
rs9456608	1.00[EUR][1000 genomes]
rs9456609	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456611	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456612	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456613	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456614	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456615	1.00[EUR][1000 genomes]
rs9456616	1.00[EUR][1000 genomes]
rs9456618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456621	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9456622	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9456624	1.00[EUR][1000 genomes]
rs9456625	1.00[EUR][1000 genomes]
rs9456626	1.00[EUR][1000 genomes]
rs9456627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456628	1.00[EUR][1000 genomes]
rs9456630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456635	1.00[YRI][hapmap]
rs9456640	0.83[EUR][1000 genomes]
rs9456643	0.83[EUR][1000 genomes]
rs9458074	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458075	1.00[EUR][1000 genomes]
rs9458076	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458079	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458080	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458081	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458082	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458083	1.00[CEU][hapmap]
rs9458084	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458088	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458089	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458090	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458091	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458092	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458095	1.00[EUR][1000 genomes]
rs9458096	1.00[EUR][1000 genomes]
rs9458097	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458101	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458103	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458104	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458111	0.86[EUR][1000 genomes]
rs9458112	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458113	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458115	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458116	1.00[EUR][1000 genomes]
rs9458118	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458120	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458123	1.00[EUR][1000 genomes]
rs9458124	1.00[EUR][1000 genomes]
rs9458125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458161	0.83[EUR][1000 genomes]
rs9986548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:161428600-161455800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:161433000-161458000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:161433200-161459200	Weak transcription	Fetal Stomach	stomach
8	chr6:161433400-161455600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:161433400-161455800	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:161433400-161455800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:161433400-161459000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:161433600-161458200	Weak transcription	Fetal Brain Female	brain
13	chr6:161433600-161459600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:161434000-161455600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:161434000-161459000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:161434800-161458200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:161435000-161458000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:161435000-161458800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:161435200-161455800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:161436800-161455600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:161437400-161457600	Weak transcription	Liver	Liver
23	chr6:161439200-161458800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:161440200-161459200	Weak transcription	Placenta	Placenta
25	chr6:161440600-161459600	Weak transcription	Esophagus	oesophagus
26	chr6:161441200-161459800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:161442600-161459200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:161442800-161455600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:161442800-161459600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:161442800-161463400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:161443600-161455600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr6:161443800-161457800	Weak transcription	Primary B cells from cord blood	blood
33	chr6:161443800-161458000	Weak transcription	HepG2	liver
34	chr6:161443800-161459000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:161443800-161459000	Weak transcription	Right Ventricle	heart
36	chr6:161443800-161462000	Weak transcription	Spleen	Spleen
37	chr6:161443800-161465600	Weak transcription	Right Atrium	heart
38	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:161446200-161455600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:161446200-161459000	Weak transcription	Fetal Heart	heart
41	chr6:161447800-161458800	Weak transcription	Hela-S3	cervix
42	chr6:161448800-161472400	Weak transcription	A549	lung
43	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:161449200-161455600	Weak transcription	Ovary	ovary
45	chr6:161449200-161455800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:161449200-161455800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:161449200-161458800	Weak transcription	Psoas Muscle	Psoas
48	chr6:161449200-161459200	Weak transcription	Left Ventricle	heart
49	chr6:161449200-161459600	Weak transcription	Lung	lung
50	chr6:161449200-161459800	Weak transcription	Pancreas	Pancrea

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