Variant report

Variant	rs73026055
Chromosome Location	chr6:161501783-161501784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161154056..161155892-chr6:161501781..161503522,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10080366	1.00[EUR][1000 genomes]
rs11966001	1.00[EUR][1000 genomes]
rs12181932	1.00[EUR][1000 genomes]
rs12333168	1.00[EUR][1000 genomes]
rs13437252	1.00[EUR][1000 genomes]
rs1822519	1.00[EUR][1000 genomes]
rs28493041	0.83[EUR][1000 genomes]
rs28542460	1.00[EUR][1000 genomes]
rs58963158	1.00[EUR][1000 genomes]
rs6455705	1.00[EUR][1000 genomes]
rs6901507	1.00[EUR][1000 genomes]
rs6922585	1.00[EUR][1000 genomes]
rs6928749	1.00[EUR][1000 genomes]
rs6930167	1.00[EUR][1000 genomes]
rs6934713	1.00[EUR][1000 genomes]
rs6935472	1.00[EUR][1000 genomes]
rs6935813	1.00[EUR][1000 genomes]
rs6936925	1.00[EUR][1000 genomes]
rs6937754	1.00[EUR][1000 genomes]
rs73015405	1.00[EUR][1000 genomes]
rs73015418	0.83[EUR][1000 genomes]
rs73015443	0.83[EUR][1000 genomes]
rs73015456	0.83[EUR][1000 genomes]
rs73022077	1.00[EUR][1000 genomes]
rs73022082	1.00[EUR][1000 genomes]
rs73022084	0.86[EUR][1000 genomes]
rs73022090	1.00[EUR][1000 genomes]
rs73022096	1.00[EUR][1000 genomes]
rs73023854	0.83[EUR][1000 genomes]
rs73023856	0.83[EUR][1000 genomes]
rs73023871	1.00[EUR][1000 genomes]
rs73024033	1.00[EUR][1000 genomes]
rs73024041	1.00[EUR][1000 genomes]
rs73024080	1.00[EUR][1000 genomes]
rs73026079	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7356842	0.86[EUR][1000 genomes]
rs7356869	1.00[EUR][1000 genomes]
rs7754196	1.00[EUR][1000 genomes]
rs7754687	1.00[EUR][1000 genomes]
rs7762953	1.00[EUR][1000 genomes]
rs7775116	1.00[EUR][1000 genomes]
rs7775538	1.00[EUR][1000 genomes]
rs9295133	1.00[EUR][1000 genomes]
rs9295135	1.00[EUR][1000 genomes]
rs9456606	1.00[EUR][1000 genomes]
rs9456608	1.00[EUR][1000 genomes]
rs9456609	1.00[EUR][1000 genomes]
rs9456610	1.00[EUR][1000 genomes]
rs9456611	1.00[EUR][1000 genomes]
rs9456613	1.00[EUR][1000 genomes]
rs9456614	1.00[EUR][1000 genomes]
rs9456615	1.00[EUR][1000 genomes]
rs9456616	1.00[EUR][1000 genomes]
rs9456621	1.00[EUR][1000 genomes]
rs9456622	1.00[EUR][1000 genomes]
rs9456624	1.00[EUR][1000 genomes]
rs9456625	1.00[EUR][1000 genomes]
rs9456626	1.00[EUR][1000 genomes]
rs9456627	1.00[EUR][1000 genomes]
rs9456628	1.00[EUR][1000 genomes]
rs9456630	1.00[EUR][1000 genomes]
rs9456640	0.83[EUR][1000 genomes]
rs9456643	0.83[EUR][1000 genomes]
rs9458074	1.00[EUR][1000 genomes]
rs9458075	1.00[EUR][1000 genomes]
rs9458076	1.00[EUR][1000 genomes]
rs9458077	1.00[EUR][1000 genomes]
rs9458079	1.00[EUR][1000 genomes]
rs9458080	1.00[EUR][1000 genomes]
rs9458081	1.00[EUR][1000 genomes]
rs9458082	1.00[EUR][1000 genomes]
rs9458084	1.00[EUR][1000 genomes]
rs9458085	1.00[EUR][1000 genomes]
rs9458088	1.00[EUR][1000 genomes]
rs9458089	1.00[EUR][1000 genomes]
rs9458090	1.00[EUR][1000 genomes]
rs9458091	1.00[EUR][1000 genomes]
rs9458092	1.00[EUR][1000 genomes]
rs9458093	1.00[EUR][1000 genomes]
rs9458094	1.00[EUR][1000 genomes]
rs9458095	1.00[EUR][1000 genomes]
rs9458096	1.00[EUR][1000 genomes]
rs9458097	1.00[EUR][1000 genomes]
rs9458098	1.00[EUR][1000 genomes]
rs9458101	1.00[EUR][1000 genomes]
rs9458103	1.00[EUR][1000 genomes]
rs9458104	1.00[EUR][1000 genomes]
rs9458105	1.00[EUR][1000 genomes]
rs9458111	0.86[EUR][1000 genomes]
rs9458112	1.00[EUR][1000 genomes]
rs9458113	1.00[EUR][1000 genomes]
rs9458115	1.00[EUR][1000 genomes]
rs9458116	1.00[EUR][1000 genomes]
rs9458118	1.00[EUR][1000 genomes]
rs9458119	1.00[EUR][1000 genomes]
rs9458120	1.00[EUR][1000 genomes]
rs9458123	1.00[EUR][1000 genomes]
rs9458124	1.00[EUR][1000 genomes]
rs9458125	1.00[EUR][1000 genomes]
rs9458127	1.00[EUR][1000 genomes]
rs9458131	1.00[EUR][1000 genomes]
rs9458133	1.00[EUR][1000 genomes]
rs9458134	1.00[EUR][1000 genomes]
rs9458161	0.83[EUR][1000 genomes]
rs9458167	0.83[EUR][1000 genomes]
rs9986548	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
2	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
3	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
4	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:161489800-161502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:161490000-161508000	Weak transcription	Fetal Heart	heart
11	chr6:161490800-161501800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:161490800-161501800	Weak transcription	Right Ventricle	heart
13	chr6:161490800-161508000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:161491000-161538400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr6:161491200-161508400	Weak transcription	Stomach Mucosa	stomach
16	chr6:161491600-161516400	Strong transcription	Placenta	Placenta
17	chr6:161491600-161525400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:161491600-161528800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr6:161491600-161529000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:161491600-161539800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:161492200-161513800	Strong transcription	Fetal Intestine Large	intestine
22	chr6:161493600-161502600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:161493800-161503800	Weak transcription	A549	lung
24	chr6:161493800-161521400	Strong transcription	Fetal Thymus	thymus
25	chr6:161494000-161505600	Strong transcription	GM12878-XiMat	blood
26	chr6:161494400-161509000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:161494400-161512600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:161494400-161513400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:161494400-161515400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:161494400-161525600	Strong transcription	Dnd41	blood
31	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:161494800-161513800	Strong transcription	Fetal Brain Female	brain
33	chr6:161495000-161505800	Strong transcription	Lung	lung
34	chr6:161495000-161512800	Strong transcription	Ovary	ovary
35	chr6:161495000-161513400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr6:161495200-161513200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr6:161495200-161538000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:161495400-161512600	Strong transcription	Fetal Stomach	stomach
39	chr6:161495400-161515400	Strong transcription	Fetal Lung	lung
40	chr6:161495400-161516400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:161495600-161507000	Strong transcription	Fetal Intestine Small	intestine
42	chr6:161495600-161512800	Strong transcription	Fetal Muscle Leg	muscle
43	chr6:161495800-161502000	Genic enhancers	Primary T cells fromperipheralblood	blood
44	chr6:161496000-161502600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:161496000-161508200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:161496000-161539800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:161496400-161506600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:161496800-161502000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:161496800-161504600	Weak transcription	Fetal Brain Male	brain
50	chr6:161497000-161503000	Weak transcription	Fetal Kidney	kidney

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