Variant report

Variant	rs9458075
Chromosome Location	chr6:161410327-161410328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:161410265-161410427	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:161410057-161414247	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:161381731..161384627-chr6:161408472..161410807,2	K562	blood:
2	chr6:161409514..161411733-chr6:161434300..161435929,2	K562	blood:
3	chr6:161409929..161412719-chr6:161465318..161467396,2	K562	blood:
4	chr6:161407945..161411607-chr6:161664296..161666241,4	K562	blood:
5	chr6:161408989..161411018-chr6:161411162..161414602,4	MCF-7	breast:

Variant related genes	Relation type
MAP3K4	TF binding region
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10080366	1.00[EUR][1000 genomes]
rs11966001	1.00[EUR][1000 genomes]
rs12181932	1.00[EUR][1000 genomes]
rs12333168	1.00[EUR][1000 genomes]
rs13437252	1.00[EUR][1000 genomes]
rs1822519	1.00[EUR][1000 genomes]
rs28493041	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28542460	1.00[EUR][1000 genomes]
rs58963158	1.00[EUR][1000 genomes]
rs6455705	1.00[EUR][1000 genomes]
rs6901507	1.00[EUR][1000 genomes]
rs6922585	1.00[EUR][1000 genomes]
rs6928749	1.00[EUR][1000 genomes]
rs6930167	1.00[EUR][1000 genomes]
rs6934713	1.00[EUR][1000 genomes]
rs6935472	1.00[EUR][1000 genomes]
rs6935813	1.00[EUR][1000 genomes]
rs6936925	1.00[EUR][1000 genomes]
rs6937754	1.00[EUR][1000 genomes]
rs73015405	1.00[EUR][1000 genomes]
rs73015418	0.83[EUR][1000 genomes]
rs73015443	0.83[EUR][1000 genomes]
rs73015456	0.83[EUR][1000 genomes]
rs73022077	1.00[EUR][1000 genomes]
rs73022082	1.00[EUR][1000 genomes]
rs73022084	0.86[EUR][1000 genomes]
rs73022090	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73022096	1.00[EUR][1000 genomes]
rs73023854	0.83[EUR][1000 genomes]
rs73023856	0.83[EUR][1000 genomes]
rs73023871	1.00[EUR][1000 genomes]
rs73024033	1.00[EUR][1000 genomes]
rs73024041	1.00[EUR][1000 genomes]
rs73024080	1.00[EUR][1000 genomes]
rs73026055	1.00[EUR][1000 genomes]
rs73026079	1.00[EUR][1000 genomes]
rs7356842	0.86[EUR][1000 genomes]
rs7356869	1.00[EUR][1000 genomes]
rs7754196	1.00[EUR][1000 genomes]
rs7754687	1.00[EUR][1000 genomes]
rs7762953	1.00[EUR][1000 genomes]
rs7775116	1.00[EUR][1000 genomes]
rs7775538	1.00[EUR][1000 genomes]
rs9295133	1.00[EUR][1000 genomes]
rs9295135	1.00[EUR][1000 genomes]
rs9456606	1.00[EUR][1000 genomes]
rs9456608	1.00[EUR][1000 genomes]
rs9456609	1.00[EUR][1000 genomes]
rs9456610	1.00[EUR][1000 genomes]
rs9456611	1.00[EUR][1000 genomes]
rs9456613	1.00[EUR][1000 genomes]
rs9456614	1.00[EUR][1000 genomes]
rs9456615	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9456616	1.00[EUR][1000 genomes]
rs9456621	1.00[EUR][1000 genomes]
rs9456622	1.00[EUR][1000 genomes]
rs9456624	1.00[EUR][1000 genomes]
rs9456625	1.00[EUR][1000 genomes]
rs9456626	1.00[EUR][1000 genomes]
rs9456627	1.00[EUR][1000 genomes]
rs9456628	1.00[EUR][1000 genomes]
rs9456630	1.00[EUR][1000 genomes]
rs9458074	1.00[EUR][1000 genomes]
rs9458076	1.00[EUR][1000 genomes]
rs9458077	1.00[EUR][1000 genomes]
rs9458079	1.00[EUR][1000 genomes]
rs9458080	1.00[EUR][1000 genomes]
rs9458081	1.00[EUR][1000 genomes]
rs9458082	1.00[EUR][1000 genomes]
rs9458084	1.00[EUR][1000 genomes]
rs9458085	1.00[EUR][1000 genomes]
rs9458088	1.00[EUR][1000 genomes]
rs9458089	1.00[EUR][1000 genomes]
rs9458090	1.00[EUR][1000 genomes]
rs9458091	1.00[EUR][1000 genomes]
rs9458092	1.00[EUR][1000 genomes]
rs9458093	1.00[EUR][1000 genomes]
rs9458094	1.00[EUR][1000 genomes]
rs9458095	1.00[EUR][1000 genomes]
rs9458096	1.00[EUR][1000 genomes]
rs9458097	1.00[EUR][1000 genomes]
rs9458098	1.00[EUR][1000 genomes]
rs9458101	1.00[EUR][1000 genomes]
rs9458103	1.00[EUR][1000 genomes]
rs9458104	1.00[EUR][1000 genomes]
rs9458105	1.00[EUR][1000 genomes]
rs9458111	0.86[EUR][1000 genomes]
rs9458112	1.00[EUR][1000 genomes]
rs9458113	1.00[EUR][1000 genomes]
rs9458115	1.00[EUR][1000 genomes]
rs9458116	1.00[EUR][1000 genomes]
rs9458118	1.00[EUR][1000 genomes]
rs9458119	1.00[EUR][1000 genomes]
rs9458120	1.00[EUR][1000 genomes]
rs9458123	1.00[EUR][1000 genomes]
rs9458124	1.00[EUR][1000 genomes]
rs9458125	1.00[EUR][1000 genomes]
rs9458127	1.00[EUR][1000 genomes]
rs9458131	1.00[EUR][1000 genomes]
rs9458133	1.00[EUR][1000 genomes]
rs9458134	1.00[EUR][1000 genomes]
rs9986548	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv965669	chr6:161410268-161411309	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161408200-161410800	Weak transcription	K562	blood
2	chr6:161408200-161411800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:161409400-161411400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:161409600-161411000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:161409800-161410800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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