Variant report

Variant	rs9456621
Chromosome Location	chr6:161493889-161493890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr6:161493586-161493894	K562	blood:	n/a	chr6:161493661-161493670 chr6:161493660-161493669 chr6:161493743-161493756 chr6:161493692-161493712

Variant related genes	Relation type
MAP3K4	TF binding region

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10080366	1.00[EUR][1000 genomes]
rs10080650	1.00[YRI][hapmap]
rs11966001	1.00[EUR][1000 genomes]
rs12181932	1.00[EUR][1000 genomes]
rs12333027	1.00[YRI][hapmap]
rs12333168	1.00[EUR][1000 genomes]
rs13437252	1.00[EUR][1000 genomes]
rs1822519	1.00[EUR][1000 genomes]
rs28493041	0.83[EUR][1000 genomes]
rs28542460	1.00[EUR][1000 genomes]
rs3798916	1.00[YRI][hapmap]
rs58963158	1.00[EUR][1000 genomes]
rs6455705	1.00[EUR][1000 genomes]
rs6901507	1.00[EUR][1000 genomes]
rs6922585	1.00[EUR][1000 genomes]
rs6928749	1.00[EUR][1000 genomes]
rs6930167	1.00[EUR][1000 genomes]
rs6934713	1.00[EUR][1000 genomes]
rs6935472	1.00[EUR][1000 genomes]
rs6935813	1.00[EUR][1000 genomes]
rs6936925	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6937754	1.00[EUR][1000 genomes]
rs73015405	1.00[EUR][1000 genomes]
rs73015418	0.83[EUR][1000 genomes]
rs73015443	0.83[EUR][1000 genomes]
rs73015456	0.83[EUR][1000 genomes]
rs73022077	1.00[EUR][1000 genomes]
rs73022082	1.00[EUR][1000 genomes]
rs73022084	0.86[EUR][1000 genomes]
rs73022090	1.00[EUR][1000 genomes]
rs73022096	1.00[EUR][1000 genomes]
rs73023854	0.83[EUR][1000 genomes]
rs73023856	0.83[EUR][1000 genomes]
rs73023871	1.00[EUR][1000 genomes]
rs73024033	1.00[EUR][1000 genomes]
rs73024041	1.00[EUR][1000 genomes]
rs73024080	1.00[EUR][1000 genomes]
rs73026055	1.00[EUR][1000 genomes]
rs73026079	1.00[EUR][1000 genomes]
rs7356842	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7356869	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7754196	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7754687	1.00[EUR][1000 genomes]
rs7762953	1.00[EUR][1000 genomes]
rs7775116	1.00[EUR][1000 genomes]
rs7775538	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9295133	1.00[EUR][1000 genomes]
rs9295135	1.00[EUR][1000 genomes]
rs9456606	1.00[EUR][1000 genomes]
rs9456608	1.00[EUR][1000 genomes]
rs9456609	1.00[EUR][1000 genomes]
rs9456610	1.00[EUR][1000 genomes]
rs9456611	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9456612	1.00[CEU][hapmap]
rs9456613	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9456614	1.00[EUR][1000 genomes]
rs9456615	1.00[EUR][1000 genomes]
rs9456616	1.00[EUR][1000 genomes]
rs9456622	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9456624	1.00[EUR][1000 genomes]
rs9456625	1.00[EUR][1000 genomes]
rs9456626	1.00[EUR][1000 genomes]
rs9456627	1.00[EUR][1000 genomes]
rs9456628	1.00[EUR][1000 genomes]
rs9456630	1.00[EUR][1000 genomes]
rs9456640	0.83[EUR][1000 genomes]
rs9456643	0.83[EUR][1000 genomes]
rs9458074	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458075	1.00[EUR][1000 genomes]
rs9458076	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458077	1.00[EUR][1000 genomes]
rs9458079	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458082	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458083	1.00[CEU][hapmap]
rs9458084	1.00[EUR][1000 genomes]
rs9458085	1.00[EUR][1000 genomes]
rs9458088	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458089	1.00[EUR][1000 genomes]
rs9458090	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458091	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458092	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458093	1.00[EUR][1000 genomes]
rs9458094	1.00[EUR][1000 genomes]
rs9458095	1.00[EUR][1000 genomes]
rs9458096	1.00[EUR][1000 genomes]
rs9458097	1.00[EUR][1000 genomes]
rs9458098	1.00[EUR][1000 genomes]
rs9458101	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458103	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458104	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458105	1.00[EUR][1000 genomes]
rs9458111	0.86[EUR][1000 genomes]
rs9458112	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458113	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458115	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458116	1.00[EUR][1000 genomes]
rs9458118	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458120	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458123	1.00[EUR][1000 genomes]
rs9458124	1.00[EUR][1000 genomes]
rs9458125	1.00[EUR][1000 genomes]
rs9458127	1.00[EUR][1000 genomes]
rs9458131	1.00[EUR][1000 genomes]
rs9458133	1.00[EUR][1000 genomes]
rs9458134	1.00[EUR][1000 genomes]
rs9458161	0.83[EUR][1000 genomes]
rs9458167	0.83[EUR][1000 genomes]
rs9986548	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
3	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
4	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
6	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
7	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
8	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
10	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
14	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:161470400-161495000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:161470600-161508000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:161471000-161503800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:161471200-161494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:161471400-161500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:161471600-161494400	Weak transcription	Osteobl	bone
21	chr6:161473000-161495000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:161473000-161495600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:161473200-161496200	Weak transcription	Psoas Muscle	Psoas
24	chr6:161473800-161494200	Weak transcription	HepG2	liver
25	chr6:161477800-161495600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:161478400-161501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:161479400-161497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:161480200-161500800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:161482200-161496400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:161482600-161494400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:161482800-161498200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:161482800-161499200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:161484200-161495000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:161485800-161496600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr6:161486200-161494000	Weak transcription	GM12878-XiMat	blood
36	chr6:161486200-161495000	Weak transcription	Esophagus	oesophagus
37	chr6:161486200-161495000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:161486200-161496400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:161486200-161496600	Weak transcription	Left Ventricle	heart
40	chr6:161486200-161499200	Weak transcription	Gastric	stomach
41	chr6:161486200-161499200	Weak transcription	Spleen	Spleen
42	chr6:161486200-161519200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:161486400-161494400	Weak transcription	Primary B cells from cord blood	blood
44	chr6:161486400-161497200	Weak transcription	Aorta	Aorta
45	chr6:161487800-161494400	Weak transcription	HMEC	breast
46	chr6:161487800-161501000	Weak transcription	NHEK	skin
47	chr6:161488000-161499200	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:161488000-161501800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:161488200-161501600	Weak transcription	NHDF-Ad	bronchial
50	chr6:161488400-161495200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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