Variant report

Variant	rs9456640
Chromosome Location	chr6:161625492-161625493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161624885..161626939-chr6:161636311..161638359,2	K562	blood:
2	chr6:161607405..161609725-chr6:161623701..161625620,3	K562	blood:
3	chr6:161421006..161425101-chr6:161625177..161629259,4	K562	blood:
4	chr6:161625007..161627754-chr6:161650672..161652327,2	K562	blood:
5	chr6:161602471..161604223-chr6:161623568..161625542,2	MCF-7	breast:
6	chr6:161623919..161626414-chr6:161687657..161690363,2	K562	blood:
7	chr6:161618660..161620548-chr6:161624919..161627802,2	MCF-7	breast:
8	chr6:161426329..161428066-chr6:161624454..161626493,2	K562	blood:

No data

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10080366	0.83[EUR][1000 genomes]
rs12181932	0.83[EUR][1000 genomes]
rs1822519	0.83[EUR][1000 genomes]
rs28542460	0.83[EUR][1000 genomes]
rs58963158	0.83[EUR][1000 genomes]
rs62437603	1.00[AFR][1000 genomes]
rs6455705	0.83[EUR][1000 genomes]
rs6901507	0.83[EUR][1000 genomes]
rs6922585	0.83[EUR][1000 genomes]
rs6928749	0.83[EUR][1000 genomes]
rs6934713	0.83[EUR][1000 genomes]
rs6935472	0.83[EUR][1000 genomes]
rs6935813	0.83[EUR][1000 genomes]
rs6936925	0.83[EUR][1000 genomes]
rs6937754	0.83[EUR][1000 genomes]
rs73015405	0.83[EUR][1000 genomes]
rs73015418	1.00[EUR][1000 genomes]
rs73015443	1.00[EUR][1000 genomes]
rs73015456	1.00[EUR][1000 genomes]
rs73022090	0.83[EUR][1000 genomes]
rs73022096	0.83[EUR][1000 genomes]
rs73024033	0.83[EUR][1000 genomes]
rs73024041	0.83[EUR][1000 genomes]
rs73024080	0.83[EUR][1000 genomes]
rs73026055	0.83[EUR][1000 genomes]
rs73026079	0.83[EUR][1000 genomes]
rs7356869	0.83[EUR][1000 genomes]
rs7754196	0.83[EUR][1000 genomes]
rs7754687	0.83[EUR][1000 genomes]
rs7762953	0.83[EUR][1000 genomes]
rs7775538	0.83[EUR][1000 genomes]
rs9295135	0.83[EUR][1000 genomes]
rs9456609	0.83[EUR][1000 genomes]
rs9456610	0.83[EUR][1000 genomes]
rs9456611	0.83[EUR][1000 genomes]
rs9456613	0.83[EUR][1000 genomes]
rs9456614	0.83[EUR][1000 genomes]
rs9456615	0.83[EUR][1000 genomes]
rs9456616	0.83[EUR][1000 genomes]
rs9456621	0.83[EUR][1000 genomes]
rs9456622	0.83[EUR][1000 genomes]
rs9456624	0.83[EUR][1000 genomes]
rs9456625	0.83[EUR][1000 genomes]
rs9456626	0.83[EUR][1000 genomes]
rs9456627	0.83[EUR][1000 genomes]
rs9456628	0.83[EUR][1000 genomes]
rs9456630	0.83[EUR][1000 genomes]
rs9456643	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458079	0.83[EUR][1000 genomes]
rs9458080	0.83[EUR][1000 genomes]
rs9458081	0.83[EUR][1000 genomes]
rs9458082	0.83[EUR][1000 genomes]
rs9458084	0.83[EUR][1000 genomes]
rs9458085	0.83[EUR][1000 genomes]
rs9458088	0.83[EUR][1000 genomes]
rs9458089	0.83[EUR][1000 genomes]
rs9458090	0.83[EUR][1000 genomes]
rs9458091	0.83[EUR][1000 genomes]
rs9458092	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9458093	0.83[EUR][1000 genomes]
rs9458094	0.83[EUR][1000 genomes]
rs9458095	0.83[EUR][1000 genomes]
rs9458096	0.83[EUR][1000 genomes]
rs9458097	0.83[EUR][1000 genomes]
rs9458098	0.83[EUR][1000 genomes]
rs9458101	0.83[EUR][1000 genomes]
rs9458103	0.83[EUR][1000 genomes]
rs9458104	0.83[EUR][1000 genomes]
rs9458105	0.83[EUR][1000 genomes]
rs9458112	0.83[EUR][1000 genomes]
rs9458113	0.83[EUR][1000 genomes]
rs9458115	0.83[EUR][1000 genomes]
rs9458116	0.83[EUR][1000 genomes]
rs9458118	0.83[EUR][1000 genomes]
rs9458119	0.83[EUR][1000 genomes]
rs9458120	0.83[EUR][1000 genomes]
rs9458123	0.83[EUR][1000 genomes]
rs9458124	0.83[EUR][1000 genomes]
rs9458125	0.83[EUR][1000 genomes]
rs9458127	0.83[EUR][1000 genomes]
rs9458131	0.83[EUR][1000 genomes]
rs9458133	0.83[EUR][1000 genomes]
rs9458134	0.83[EUR][1000 genomes]
rs9458161	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9986548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv5575	chr6:161611584-161643479	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161585600-161626000	Weak transcription	Right Atrium	heart
2	chr6:161591400-161626200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:161600400-161626000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:161601400-161636200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:161602800-161626000	Weak transcription	Gastric	stomach
7	chr6:161607800-161629800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:161607800-161644200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:161608000-161636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:161610600-161626000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:161610600-161635800	Weak transcription	Ovary	ovary
12	chr6:161610600-161638000	Weak transcription	Aorta	Aorta
13	chr6:161610800-161625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:161611000-161637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:161615600-161626200	Weak transcription	Esophagus	oesophagus
16	chr6:161615800-161630000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:161616000-161627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:161618600-161625600	Weak transcription	Fetal Stomach	stomach
19	chr6:161619600-161625600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:161619600-161626200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:161619600-161626600	Enhancers	Brain Angular Gyrus	brain
22	chr6:161619800-161632800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:161620000-161626000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:161621800-161626000	Weak transcription	Fetal Brain Female	brain
25	chr6:161622000-161625600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:161622000-161625600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:161622000-161625600	Weak transcription	Brain Germinal Matrix	brain
28	chr6:161622200-161626000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:161622200-161626400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:161622600-161625600	Weak transcription	Fetal Brain Male	brain
31	chr6:161622800-161626000	Weak transcription	Spleen	Spleen
32	chr6:161622800-161638200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:161623000-161625800	Weak transcription	Brain Anterior Caudate	brain
34	chr6:161623200-161632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:161623200-161636400	Weak transcription	Primary T cells from cord blood	blood
36	chr6:161623400-161626000	Weak transcription	Left Ventricle	heart
37	chr6:161623600-161627400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:161623800-161625800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr6:161623800-161628800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:161624000-161625800	Enhancers	Brain Hippocampus Middle	brain
41	chr6:161624200-161625600	Weak transcription	Brain Substantia Nigra	brain
42	chr6:161624200-161626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:161624200-161630600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:161624400-161625800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:161624800-161625600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr6:161624800-161625600	Enhancers	K562	blood
47	chr6:161625000-161626600	Enhancers	Fetal Heart	heart
48	chr6:161625200-161625600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:161625200-161625800	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:161625200-161626000	Weak transcription	NH-A	brain

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