Variant report

Variant	rs9458161
Chromosome Location	chr6:161653212-161653213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161411531..161413327-chr6:161653025..161655728,2	K562	blood:
2	chr6:161412566..161414577-chr6:161651798..161653599,2	K562	blood:

Variant related genes	Relation type
ENSG00000272841	Chromatin interaction
ENSG00000085511	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12181932	0.83[EUR][1000 genomes]
rs1822519	0.83[EUR][1000 genomes]
rs28542460	0.83[EUR][1000 genomes]
rs58963158	0.83[EUR][1000 genomes]
rs62437603	1.00[AFR][1000 genomes]
rs6455705	0.83[EUR][1000 genomes]
rs6901507	0.83[EUR][1000 genomes]
rs6922585	0.83[EUR][1000 genomes]
rs6928749	0.83[EUR][1000 genomes]
rs6934713	0.83[EUR][1000 genomes]
rs6935472	0.83[EUR][1000 genomes]
rs6935813	0.83[EUR][1000 genomes]
rs6936925	0.83[EUR][1000 genomes]
rs6937754	0.83[EUR][1000 genomes]
rs73015405	0.83[EUR][1000 genomes]
rs73015418	1.00[EUR][1000 genomes]
rs73015443	1.00[EUR][1000 genomes]
rs73015456	1.00[EUR][1000 genomes]
rs73024080	0.83[EUR][1000 genomes]
rs73026055	0.83[EUR][1000 genomes]
rs73026079	0.83[EUR][1000 genomes]
rs7356869	0.83[EUR][1000 genomes]
rs7754196	0.83[EUR][1000 genomes]
rs7754687	0.83[EUR][1000 genomes]
rs7762953	0.83[EUR][1000 genomes]
rs7775538	0.83[EUR][1000 genomes]
rs9295135	0.83[EUR][1000 genomes]
rs9456613	0.83[EUR][1000 genomes]
rs9456614	0.83[EUR][1000 genomes]
rs9456615	0.83[EUR][1000 genomes]
rs9456616	0.83[EUR][1000 genomes]
rs9456621	0.83[EUR][1000 genomes]
rs9456622	0.83[EUR][1000 genomes]
rs9456624	0.83[EUR][1000 genomes]
rs9456625	0.83[EUR][1000 genomes]
rs9456626	0.83[EUR][1000 genomes]
rs9456627	0.83[EUR][1000 genomes]
rs9456628	0.83[EUR][1000 genomes]
rs9456630	0.83[EUR][1000 genomes]
rs9456640	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9456643	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458101	0.83[EUR][1000 genomes]
rs9458103	0.83[EUR][1000 genomes]
rs9458104	0.83[EUR][1000 genomes]
rs9458105	0.83[EUR][1000 genomes]
rs9458112	0.83[EUR][1000 genomes]
rs9458113	0.83[EUR][1000 genomes]
rs9458115	0.83[EUR][1000 genomes]
rs9458116	0.83[EUR][1000 genomes]
rs9458118	0.83[EUR][1000 genomes]
rs9458119	0.83[EUR][1000 genomes]
rs9458120	0.83[EUR][1000 genomes]
rs9458123	0.83[EUR][1000 genomes]
rs9458124	0.83[EUR][1000 genomes]
rs9458125	0.83[EUR][1000 genomes]
rs9458127	0.83[EUR][1000 genomes]
rs9458131	0.83[EUR][1000 genomes]
rs9458133	0.83[EUR][1000 genomes]
rs9458134	0.83[EUR][1000 genomes]
rs9458167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9986548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
6	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:161644400-161655000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:161647200-161663200	Weak transcription	Thymus	Thymus
9	chr6:161648000-161654000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:161648000-161656800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:161648000-161660600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:161648400-161653800	Strong transcription	Primary B cells from cord blood	blood
13	chr6:161648800-161656800	Weak transcription	Right Ventricle	heart
14	chr6:161649200-161655000	Weak transcription	HMEC	breast
15	chr6:161649400-161657400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:161649400-161662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:161649600-161693800	Weak transcription	Right Atrium	heart
18	chr6:161650000-161655000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:161650000-161662800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:161650200-161655000	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:161650200-161656800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:161650400-161658000	Enhancers	Brain Substantia Nigra	brain
23	chr6:161650600-161655000	Weak transcription	NHEK	skin
24	chr6:161650800-161653400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:161650800-161653800	Weak transcription	Brain Germinal Matrix	brain
26	chr6:161650800-161653800	Weak transcription	Fetal Heart	heart
27	chr6:161650800-161654200	Weak transcription	Fetal Brain Female	brain
28	chr6:161650800-161655000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:161650800-161655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:161650800-161655000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:161650800-161655000	Weak transcription	NHLF	lung
32	chr6:161650800-161655200	Weak transcription	Fetal Lung	lung
33	chr6:161651000-161653600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:161651000-161653600	Weak transcription	Brain Anterior Caudate	brain
35	chr6:161651000-161653600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:161651000-161653600	Weak transcription	Ovary	ovary
37	chr6:161651000-161653800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:161651000-161654600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:161651000-161654600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:161651000-161654600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:161651000-161654600	Weak transcription	Fetal Stomach	stomach
42	chr6:161651000-161654800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:161651000-161654800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:161651000-161654800	Weak transcription	Placenta	Placenta
45	chr6:161651000-161655000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:161651000-161655000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr6:161651000-161655000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:161651000-161655000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:161651000-161655000	Weak transcription	Fetal Brain Male	brain
50	chr6:161651000-161655000	Weak transcription	Rectal Smooth Muscle	rectum

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