Variant report

Variant	rs28493041
Chromosome Location	chr6:161390547-161390548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161376616..161379029-chr6:161389895..161392402,2	K562	blood:
2	chr6:161384126..161386705-chr6:161388829..161391030,2	K562	blood:
3	chr6:161388337..161390825-chr6:161398571..161400155,2	MCF-7	breast:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10080366	0.83[EUR][1000 genomes]
rs11966001	0.83[EUR][1000 genomes]
rs12181932	0.83[EUR][1000 genomes]
rs12333168	0.83[EUR][1000 genomes]
rs13437252	0.83[EUR][1000 genomes]
rs1822519	0.83[EUR][1000 genomes]
rs28542460	0.83[EUR][1000 genomes]
rs58963158	0.83[EUR][1000 genomes]
rs6455705	0.83[EUR][1000 genomes]
rs6901507	0.83[EUR][1000 genomes]
rs6922585	0.83[EUR][1000 genomes]
rs6928749	0.83[EUR][1000 genomes]
rs6930167	0.83[EUR][1000 genomes]
rs6934713	0.83[EUR][1000 genomes]
rs6935472	0.83[EUR][1000 genomes]
rs6935813	0.83[EUR][1000 genomes]
rs6936925	0.83[EUR][1000 genomes]
rs6937754	0.83[EUR][1000 genomes]
rs73015405	0.83[EUR][1000 genomes]
rs73022077	0.83[EUR][1000 genomes]
rs73022082	0.83[EUR][1000 genomes]
rs73022090	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73022096	0.83[EUR][1000 genomes]
rs73023854	1.00[EUR][1000 genomes]
rs73023856	1.00[EUR][1000 genomes]
rs73023871	0.83[EUR][1000 genomes]
rs73024033	0.83[EUR][1000 genomes]
rs73024041	0.83[EUR][1000 genomes]
rs73024080	0.83[EUR][1000 genomes]
rs73026055	0.83[EUR][1000 genomes]
rs73026079	0.83[EUR][1000 genomes]
rs7356869	0.83[EUR][1000 genomes]
rs7754196	0.83[EUR][1000 genomes]
rs7754687	0.83[EUR][1000 genomes]
rs7762953	0.83[EUR][1000 genomes]
rs7775116	0.83[EUR][1000 genomes]
rs7775538	0.83[EUR][1000 genomes]
rs9295133	0.83[EUR][1000 genomes]
rs9295135	0.83[EUR][1000 genomes]
rs9456606	0.83[EUR][1000 genomes]
rs9456608	0.83[EUR][1000 genomes]
rs9456609	0.83[EUR][1000 genomes]
rs9456610	0.83[EUR][1000 genomes]
rs9456611	0.83[EUR][1000 genomes]
rs9456613	0.83[EUR][1000 genomes]
rs9456614	0.83[EUR][1000 genomes]
rs9456615	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9456616	0.83[EUR][1000 genomes]
rs9456621	0.83[EUR][1000 genomes]
rs9456622	0.83[EUR][1000 genomes]
rs9456624	0.83[EUR][1000 genomes]
rs9456625	0.83[EUR][1000 genomes]
rs9456626	0.83[EUR][1000 genomes]
rs9456627	0.83[EUR][1000 genomes]
rs9456628	0.83[EUR][1000 genomes]
rs9456630	0.83[EUR][1000 genomes]
rs9458074	0.83[EUR][1000 genomes]
rs9458075	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9458076	0.83[EUR][1000 genomes]
rs9458077	0.83[EUR][1000 genomes]
rs9458079	0.83[EUR][1000 genomes]
rs9458080	0.83[EUR][1000 genomes]
rs9458081	0.83[EUR][1000 genomes]
rs9458082	0.83[EUR][1000 genomes]
rs9458084	0.83[EUR][1000 genomes]
rs9458085	0.83[EUR][1000 genomes]
rs9458088	0.83[EUR][1000 genomes]
rs9458089	0.83[EUR][1000 genomes]
rs9458090	0.83[EUR][1000 genomes]
rs9458091	0.83[EUR][1000 genomes]
rs9458092	0.83[EUR][1000 genomes]
rs9458093	0.83[EUR][1000 genomes]
rs9458094	0.83[EUR][1000 genomes]
rs9458095	0.83[EUR][1000 genomes]
rs9458096	0.83[EUR][1000 genomes]
rs9458097	0.83[EUR][1000 genomes]
rs9458098	0.83[EUR][1000 genomes]
rs9458101	0.83[EUR][1000 genomes]
rs9458103	0.83[EUR][1000 genomes]
rs9458104	0.83[EUR][1000 genomes]
rs9458105	0.83[EUR][1000 genomes]
rs9458112	0.83[EUR][1000 genomes]
rs9458113	0.83[EUR][1000 genomes]
rs9458115	0.83[EUR][1000 genomes]
rs9458116	0.83[EUR][1000 genomes]
rs9458118	0.83[EUR][1000 genomes]
rs9458119	0.83[EUR][1000 genomes]
rs9458120	0.83[EUR][1000 genomes]
rs9458123	0.83[EUR][1000 genomes]
rs9458124	0.83[EUR][1000 genomes]
rs9458125	0.83[EUR][1000 genomes]
rs9458127	0.83[EUR][1000 genomes]
rs9458131	0.83[EUR][1000 genomes]
rs9458133	0.83[EUR][1000 genomes]
rs9458134	0.83[EUR][1000 genomes]
rs9986548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3366039	chr6:161388612-161390660	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161372800-161394000	Weak transcription	Right Atrium	heart
2	chr6:161389200-161392600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:161389800-161390800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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