Variant report

Variant	rs73023856
Chromosome Location	chr6:161396374-161396375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10080366	0.83[EUR][1000 genomes]
rs11966001	0.83[EUR][1000 genomes]
rs12181932	0.83[EUR][1000 genomes]
rs12333168	0.83[EUR][1000 genomes]
rs13437252	0.83[EUR][1000 genomes]
rs1822519	0.83[EUR][1000 genomes]
rs28493041	1.00[EUR][1000 genomes]
rs28542460	0.83[EUR][1000 genomes]
rs58963158	0.83[EUR][1000 genomes]
rs6455705	0.83[EUR][1000 genomes]
rs6901507	0.83[EUR][1000 genomes]
rs6922585	0.83[EUR][1000 genomes]
rs6928749	0.83[EUR][1000 genomes]
rs6930167	0.83[EUR][1000 genomes]
rs6934713	0.83[EUR][1000 genomes]
rs6935472	0.83[EUR][1000 genomes]
rs6935813	0.83[EUR][1000 genomes]
rs6936925	0.83[EUR][1000 genomes]
rs6937754	0.83[EUR][1000 genomes]
rs73015405	0.83[EUR][1000 genomes]
rs73022077	0.83[EUR][1000 genomes]
rs73022082	0.83[EUR][1000 genomes]
rs73022090	0.83[EUR][1000 genomes]
rs73022096	0.83[EUR][1000 genomes]
rs73023854	1.00[EUR][1000 genomes]
rs73023871	0.83[EUR][1000 genomes]
rs73024033	0.83[EUR][1000 genomes]
rs73024041	0.83[EUR][1000 genomes]
rs73024080	0.83[EUR][1000 genomes]
rs73026055	0.83[EUR][1000 genomes]
rs73026079	0.83[EUR][1000 genomes]
rs7356869	0.83[EUR][1000 genomes]
rs7754196	0.83[EUR][1000 genomes]
rs7754687	0.83[EUR][1000 genomes]
rs7762953	0.83[EUR][1000 genomes]
rs7775116	0.83[EUR][1000 genomes]
rs7775538	0.83[EUR][1000 genomes]
rs9295133	0.83[EUR][1000 genomes]
rs9295135	0.83[EUR][1000 genomes]
rs9456606	0.83[EUR][1000 genomes]
rs9456608	0.83[EUR][1000 genomes]
rs9456609	0.83[EUR][1000 genomes]
rs9456610	0.83[EUR][1000 genomes]
rs9456611	0.83[EUR][1000 genomes]
rs9456613	0.83[EUR][1000 genomes]
rs9456614	0.83[EUR][1000 genomes]
rs9456615	0.83[EUR][1000 genomes]
rs9456616	0.83[EUR][1000 genomes]
rs9456621	0.83[EUR][1000 genomes]
rs9456622	0.83[EUR][1000 genomes]
rs9456624	0.83[EUR][1000 genomes]
rs9456625	0.83[EUR][1000 genomes]
rs9456626	0.83[EUR][1000 genomes]
rs9456627	0.83[EUR][1000 genomes]
rs9456628	0.83[EUR][1000 genomes]
rs9456630	0.83[EUR][1000 genomes]
rs9458074	0.83[EUR][1000 genomes]
rs9458075	0.83[EUR][1000 genomes]
rs9458076	0.83[EUR][1000 genomes]
rs9458077	0.83[EUR][1000 genomes]
rs9458079	0.83[EUR][1000 genomes]
rs9458080	0.83[EUR][1000 genomes]
rs9458081	0.83[EUR][1000 genomes]
rs9458082	0.83[EUR][1000 genomes]
rs9458084	0.83[EUR][1000 genomes]
rs9458085	0.83[EUR][1000 genomes]
rs9458088	0.83[EUR][1000 genomes]
rs9458089	0.83[EUR][1000 genomes]
rs9458090	0.83[EUR][1000 genomes]
rs9458091	0.83[EUR][1000 genomes]
rs9458092	0.83[EUR][1000 genomes]
rs9458093	0.83[EUR][1000 genomes]
rs9458094	0.83[EUR][1000 genomes]
rs9458095	0.83[EUR][1000 genomes]
rs9458096	0.83[EUR][1000 genomes]
rs9458097	0.83[EUR][1000 genomes]
rs9458098	0.83[EUR][1000 genomes]
rs9458101	0.83[EUR][1000 genomes]
rs9458103	0.83[EUR][1000 genomes]
rs9458104	0.83[EUR][1000 genomes]
rs9458105	0.83[EUR][1000 genomes]
rs9458112	0.83[EUR][1000 genomes]
rs9458113	0.83[EUR][1000 genomes]
rs9458115	0.83[EUR][1000 genomes]
rs9458116	0.83[EUR][1000 genomes]
rs9458118	0.83[EUR][1000 genomes]
rs9458119	0.83[EUR][1000 genomes]
rs9458120	0.83[EUR][1000 genomes]
rs9458123	0.83[EUR][1000 genomes]
rs9458124	0.83[EUR][1000 genomes]
rs9458125	0.83[EUR][1000 genomes]
rs9458127	0.83[EUR][1000 genomes]
rs9458131	0.83[EUR][1000 genomes]
rs9458133	0.83[EUR][1000 genomes]
rs9458134	0.83[EUR][1000 genomes]
rs9986548	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161392200-161396400	Enhancers	HSMM	muscle
2	chr6:161392400-161396400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:161392600-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:161392800-161396400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:161392800-161396400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:161392800-161396600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:161392800-161396600	Enhancers	HMEC	breast
8	chr6:161393000-161396400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:161393000-161396400	Enhancers	NHLF	lung
10	chr6:161393200-161397000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:161393800-161396400	Enhancers	Fetal Heart	heart
12	chr6:161393800-161396400	Enhancers	Left Ventricle	heart
13	chr6:161393800-161396400	Enhancers	Ovary	ovary
14	chr6:161394000-161396400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:161394000-161396400	Enhancers	Adipose Nuclei	Adipose
16	chr6:161394000-161396400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:161394000-161396600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:161394000-161396600	Enhancers	Fetal Lung	lung
19	chr6:161394200-161396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:161394200-161396800	Enhancers	Fetal Stomach	stomach
21	chr6:161394400-161396400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:161394600-161396400	Enhancers	Brain Germinal Matrix	brain
23	chr6:161394600-161396600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:161394600-161396800	Enhancers	Rectal Smooth Muscle	rectum
25	chr6:161395000-161396400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr6:161395400-161396400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:161395400-161396400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:161395400-161396600	Enhancers	Fetal Brain Male	brain
29	chr6:161395400-161396800	Enhancers	NHDF-Ad	bronchial
30	chr6:161395600-161396400	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr6:161395600-161396400	Enhancers	Osteobl	bone
32	chr6:161395600-161396800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:161395600-161397000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:161395600-161397200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr6:161395800-161399000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:161395800-161399000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:161396000-161396400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:161396000-161399200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:161396000-161399200	Weak transcription	NH-A	brain
40	chr6:161396200-161396400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:161396200-161396400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:161396200-161396400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:161396200-161397200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:161396200-161399200	Weak transcription	HSMMtube	muscle

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