Variant report

Variant	rs13437252
Chromosome Location	chr6:161416389-161416390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161352344..161353198-chr6:161416107..161416981,2	MCF-7	breast:
2	chr6:161412541..161414209-chr6:161416137..161417801,2	MCF-7	breast:
3	chr6:161410042..161415394-chr6:161415769..161420242,7	MCF-7	breast:
4	chr6:161413545..161416445-chr6:161589800..161592180,2	K562	blood:
5	chr6:161414058..161416452-chr6:161484999..161486533,2	K562	blood:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10080366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966001	1.00[EUR][1000 genomes]
rs12181932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892148	1.00[AMR][1000 genomes]
rs16892155	1.00[AMR][1000 genomes]
rs16892160	1.00[AMR][1000 genomes]
rs16892171	1.00[AMR][1000 genomes]
rs1822519	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28493041	0.83[EUR][1000 genomes]
rs28542460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58963158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6455705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901507	1.00[EUR][1000 genomes]
rs6922585	1.00[EUR][1000 genomes]
rs6928749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935472	1.00[EUR][1000 genomes]
rs6935813	1.00[EUR][1000 genomes]
rs6936925	1.00[EUR][1000 genomes]
rs6937754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015405	1.00[EUR][1000 genomes]
rs73015418	0.83[EUR][1000 genomes]
rs73015443	0.83[EUR][1000 genomes]
rs73015456	0.83[EUR][1000 genomes]
rs73022077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73022082	1.00[EUR][1000 genomes]
rs73022084	0.86[EUR][1000 genomes]
rs73022090	1.00[EUR][1000 genomes]
rs73022096	1.00[EUR][1000 genomes]
rs73023854	0.83[EUR][1000 genomes]
rs73023856	0.83[EUR][1000 genomes]
rs73023871	1.00[EUR][1000 genomes]
rs73024033	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73024041	1.00[EUR][1000 genomes]
rs73024080	1.00[EUR][1000 genomes]
rs73026055	1.00[EUR][1000 genomes]
rs73026079	1.00[EUR][1000 genomes]
rs7356842	0.86[EUR][1000 genomes]
rs7356869	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754196	1.00[EUR][1000 genomes]
rs7754687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762953	1.00[EUR][1000 genomes]
rs7767689	1.00[AMR][1000 genomes]
rs7767849	1.00[AMR][1000 genomes]
rs7775116	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775538	1.00[EUR][1000 genomes]
rs9295133	1.00[EUR][1000 genomes]
rs9295135	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456606	1.00[EUR][1000 genomes]
rs9456608	1.00[EUR][1000 genomes]
rs9456609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456610	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456611	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456612	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456613	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456614	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456615	1.00[EUR][1000 genomes]
rs9456616	1.00[EUR][1000 genomes]
rs9456618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9456621	1.00[EUR][1000 genomes]
rs9456622	1.00[EUR][1000 genomes]
rs9456624	1.00[EUR][1000 genomes]
rs9456625	1.00[EUR][1000 genomes]
rs9456626	1.00[EUR][1000 genomes]
rs9456627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9456628	1.00[EUR][1000 genomes]
rs9456630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458074	1.00[EUR][1000 genomes]
rs9458075	1.00[EUR][1000 genomes]
rs9458076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458084	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458088	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458089	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9458090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458091	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458093	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458094	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458095	1.00[EUR][1000 genomes]
rs9458096	1.00[EUR][1000 genomes]
rs9458097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458098	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458103	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458105	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458111	0.86[EUR][1000 genomes]
rs9458112	1.00[EUR][1000 genomes]
rs9458113	1.00[EUR][1000 genomes]
rs9458115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458116	1.00[EUR][1000 genomes]
rs9458118	1.00[EUR][1000 genomes]
rs9458119	1.00[EUR][1000 genomes]
rs9458120	1.00[EUR][1000 genomes]
rs9458123	1.00[EUR][1000 genomes]
rs9458124	1.00[EUR][1000 genomes]
rs9458125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9458134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9986548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161411800-161417800	Active TSS	GM12878-XiMat	blood
2	chr6:161413600-161416400	Weak transcription	Spleen	Spleen
3	chr6:161413800-161416400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:161413800-161416400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:161413800-161416400	Weak transcription	Esophagus	oesophagus
6	chr6:161413800-161416400	Weak transcription	Gastric	stomach
7	chr6:161413800-161416400	Weak transcription	Lung	lung
8	chr6:161413800-161416400	Weak transcription	Pancreas	Pancrea
9	chr6:161413800-161416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:161413800-161416400	Weak transcription	Small Intestine	intestine
11	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
12	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:161414000-161416400	Weak transcription	Fetal Thymus	thymus
14	chr6:161414000-161416400	Weak transcription	Left Ventricle	heart
15	chr6:161414000-161416800	Weak transcription	Right Atrium	heart
16	chr6:161414000-161417200	Weak transcription	Brain Substantia Nigra	brain
17	chr6:161414000-161422400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:161414000-161430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:161414200-161416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:161414200-161416400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:161414200-161416400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:161414200-161416400	Weak transcription	Fetal Intestine Small	intestine
24	chr6:161414200-161416400	Weak transcription	Right Ventricle	heart
25	chr6:161414200-161416400	Weak transcription	HSMMtube	muscle
26	chr6:161414200-161416600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:161414200-161416600	Weak transcription	HUVEC	blood vessel
28	chr6:161414200-161416800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:161414200-161416800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:161414200-161416800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:161414200-161416800	Weak transcription	NHLF	lung
32	chr6:161414200-161417000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:161414200-161417000	Weak transcription	Brain Angular Gyrus	brain
34	chr6:161414200-161417200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:161414200-161417200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:161414200-161417400	Weak transcription	Fetal Brain Female	brain
37	chr6:161414200-161417600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:161414200-161417800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:161414200-161418000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:161414200-161418000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:161414200-161419000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:161414200-161420400	Weak transcription	Thymus	Thymus
43	chr6:161414200-161421400	Weak transcription	Brain Anterior Caudate	brain
44	chr6:161414200-161422400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:161414200-161422400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:161414200-161422400	Weak transcription	A549	lung
47	chr6:161414200-161422600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:161414200-161422600	Weak transcription	Fetal Kidney	kidney
49	chr6:161414200-161422600	Weak transcription	Stomach Mucosa	stomach
50	chr6:161414200-161431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links