Variant report

Variant	rs7767689
Chromosome Location	chr6:161354030-161354031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161349966..161354183-chr6:161410810..161413824,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10080366	1.00[AMR][1000 genomes]
rs12181932	1.00[AMR][1000 genomes]
rs12333168	1.00[AMR][1000 genomes]
rs13437252	1.00[AMR][1000 genomes]
rs16892148	1.00[AMR][1000 genomes]
rs16892155	1.00[AMR][1000 genomes]
rs16892160	1.00[AMR][1000 genomes]
rs16892171	1.00[AMR][1000 genomes]
rs28542460	1.00[AMR][1000 genomes]
rs58963158	1.00[AMR][1000 genomes]
rs6455705	1.00[AMR][1000 genomes]
rs6928749	1.00[AMR][1000 genomes]
rs6930167	1.00[AMR][1000 genomes]
rs6934713	1.00[AMR][1000 genomes]
rs6937754	1.00[AMR][1000 genomes]
rs73022077	1.00[AMR][1000 genomes]
rs73024033	1.00[AMR][1000 genomes]
rs7356869	1.00[AMR][1000 genomes]
rs7754687	1.00[AMR][1000 genomes]
rs7767849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775116	1.00[AMR][1000 genomes]
rs9295135	1.00[AMR][1000 genomes]
rs9456609	1.00[AMR][1000 genomes]
rs9456610	1.00[AMR][1000 genomes]
rs9456611	1.00[AMR][1000 genomes]
rs9456612	1.00[AMR][1000 genomes]
rs9456613	1.00[AMR][1000 genomes]
rs9456614	1.00[AMR][1000 genomes]
rs9456618	1.00[AMR][1000 genomes]
rs9456627	1.00[AMR][1000 genomes]
rs9456630	1.00[AMR][1000 genomes]
rs9458076	1.00[AMR][1000 genomes]
rs9458077	1.00[AMR][1000 genomes]
rs9458079	1.00[AMR][1000 genomes]
rs9458080	1.00[AMR][1000 genomes]
rs9458081	1.00[AMR][1000 genomes]
rs9458082	1.00[AMR][1000 genomes]
rs9458084	1.00[AMR][1000 genomes]
rs9458085	1.00[AMR][1000 genomes]
rs9458088	1.00[AMR][1000 genomes]
rs9458090	1.00[AMR][1000 genomes]
rs9458091	1.00[AMR][1000 genomes]
rs9458092	1.00[AMR][1000 genomes]
rs9458093	1.00[AMR][1000 genomes]
rs9458094	1.00[AMR][1000 genomes]
rs9458097	1.00[AMR][1000 genomes]
rs9458098	1.00[AMR][1000 genomes]
rs9458101	1.00[AMR][1000 genomes]
rs9458103	1.00[AMR][1000 genomes]
rs9458104	1.00[AMR][1000 genomes]
rs9458105	1.00[AMR][1000 genomes]
rs9458115	1.00[AMR][1000 genomes]
rs9458125	1.00[AMR][1000 genomes]
rs9458127	1.00[AMR][1000 genomes]
rs9458131	1.00[AMR][1000 genomes]
rs9458133	1.00[AMR][1000 genomes]
rs9458134	1.00[AMR][1000 genomes]
rs9986548	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3392270	chr6:161353362-161357560	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161352600-161355200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:161352600-161355400	Weak transcription	Esophagus	oesophagus
3	chr6:161352600-161355400	Weak transcription	Lung	lung
4	chr6:161352800-161354200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:161352800-161354200	Weak transcription	Placenta	Placenta
6	chr6:161352800-161355400	Weak transcription	Pancreas	Pancrea
7	chr6:161352800-161355600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:161352800-161357200	Weak transcription	Fetal Brain Male	brain
9	chr6:161353000-161354200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:161353000-161355400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:161354000-161355000	Enhancers	K562	blood

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